HIV genome-wide protein associations: a review of 30 years of research

G Li, E De Clercq - Microbiology and Molecular Biology Reviews, 2016 - Am Soc Microbiol
The HIV genome encodes a small number of viral proteins (ie, 16), invariably establishing
cooperative associations among HIV proteins and between HIV and host proteins, to invade …

Human immunodeficiency virus type 1 Nef: adapting to intracellular trafficking pathways

JF Roeth, KL Collins - Microbiology and molecular biology reviews, 2006 - Am Soc Microbiol
The Nef protein of primate lentiviruses is a unique protein that has evolved in several ways
to manipulate the biology of an infected cell to support viral replication, immune evasion …

Noise in cellular signaling pathways: causes and effects

JE Ladbury, ST Arold - Trends in biochemical sciences, 2012 - cell.com
Noise caused by stochastic fluctuations in genetic circuits (transcription and translation) is
now appreciated as a central aspect of cell function and phenotypic behavior. Noise has …

Dynamic Nef and Nef dynamics: how structure could explain the complex activities of this small HIV protein

ST Arold, AS Baur - Trends in biochemical sciences, 2001 - cell.com
The Nef protein of the human immunodeficiency virus is as important for disease
progression as it is perplexing in its plethora of target molecules and functions. In this article …

Chimeric antigen receptors enable superior control of HIV replication by rapidly killing infected cells

Y Zhou, J Jadlowsky, C Baiduc, AW Klattenhoff… - PLoS …, 2023 - journals.plos.org
Engineered T cells hold great promise to become part of an effective HIV cure strategy, but it
is currently unclear how best to redirect T cells to target HIV. To gain insight, we generated …

HIV-1 Nef binds PACS-2 to assemble a multikinase cascade that triggers major histocompatibility complex class I (MHC-I) down-regulation: analysis using short …

KM Atkins, L Thomas, RT Youker, MJ Harriff… - Journal of Biological …, 2008 - ASBMB
Human immunodeficiency virus, type 1, negative factor (Nef) initiates down-regulation of cell-
surface major histocompatibility complex-I (MHC-I) by assembling an Src family kinase …

Mechanisms of HIV-1 Nef function and intracellular signaling

JL Foster, SJ Denial, BRS Temple… - Journal of Neuroimmune …, 2011 - Springer
Advances in the last several years have enhanced mechanistic understanding of Nef-
induced CD4 and MHCI downregulation and have suggested a new paradigm for analyzing …

HIV subtype and Nef-mediated immune evasion function correlate with viral reservoir size in early-treated individuals

FH Omondi, S Chandrarathna, S Mujib… - Journal of …, 2019 - Am Soc Microbiol
The HIV accessory protein Nef modulates key immune evasion and pathogenic functions,
and its encoding gene region exhibits high sequence diversity. Given the recent …

Ability of HIV-1 Nef to downregulate CD4 and HLA class I differs among viral subtypes

JK Mann, H Byakwaga, XT Kuang, AQ Le, CJ Brumme… - Retrovirology, 2013 - Springer
Background The highly genetically diverse HIV-1 group M subtypes may differ in their
biological properties. Nef is an important mediator of viral pathogenicity; however, to date, a …

Implications of Nef: host cell interactions in viral persistence and progression to AIDS

NJ Arhel, F Kirchhoff - HIV Interactions with Host Cell Proteins, 2009 - Springer
Abstract The HIV and SIV Nef accessory proteins are potent enhancers of viral persistence
and accelerate progression to AIDS in HIV-1-infected patients and non-human primate …