A pragmatic guide to enrichment strategies for mass spectrometry–based glycoproteomics

NM Riley, CR Bertozzi, SJ Pitteri - Molecular & Cellular Proteomics, 2021 - ASBMB
Glycosylation is a prevalent, yet heterogeneous modification with a broad range of
implications in molecular biology. This heterogeneity precludes enrichment strategies that …

Automated proteomic sample preparation: The key component for high throughput and quantitative mass spectrometry analysis

Q Fu, CI Murray, OA Karpov… - Mass spectrometry …, 2023 - Wiley Online Library
Sample preparation for mass spectrometry‐based proteomics has many tedious and time‐
consuming steps that can introduce analytical errors. In particular, the steps around the …

Automated sample preparation with SP 3 for low‐input clinical proteomics

T Müller, M Kalxdorf, R Longuespée… - Molecular systems …, 2020 - embopress.org
High‐throughput and streamlined workflows are essential in clinical proteomics for
standardized processing of samples from a variety of sources, including fresh‐frozen tissue …

Solvent precipitation SP3 (SP4) enhances recovery for proteomics sample preparation without magnetic beads

HE Johnston, K Yadav, JM Kirkpatrick… - Analytical …, 2022 - ACS Publications
Complete, reproducible extraction of protein material is essential for comprehensive and
unbiased proteome analyses. A current gold standard is single-pot, solid-phase-enhanced …

Miniaturized sample preparation on a digital microfluidics device for sensitive bottom-up microproteomics of mammalian cells using magnetic beads and mass …

J Leipert, A Tholey - Lab on a Chip, 2019 - pubs.rsc.org
While LC-MS-based proteomics with high nanograms to micrograms of total protein has
become routine, the analysis of samples derived from low cell numbers is challenged by …

Research on the human proteome reaches a major milestone:> 90% of predicted human proteins now credibly detected, according to the HUPO Human Proteome …

GS Omenn, L Lane, CM Overall… - Journal of proteome …, 2020 - ACS Publications
According to the 2020 Metrics of the HUPO Human Proteome Project (HPP), expression has
now been detected at the protein level for> 90% of the 19 773 predicted proteins coded in …

Automated 16-plex plasma proteomics with real-time search and ion mobility mass spectrometry enables large-scale profiling in naked mole-rats and mice

A Gaun, KN Lewis Hardell, N Olsson… - Journal of Proteome …, 2021 - ACS Publications
Performing large-scale plasma proteome profiling is challenging due to limitations imposed
by lengthy preparation and instrument time. We present a fully automated multiplexed …

Proteomics for low cell numbers: how to optimize the sample preparation workflow for mass spectrometry analysis

S Kassem, K van der Pan, AL de Jager… - Journal of Proteome …, 2021 - ACS Publications
Nowadays, massive genomics and transcriptomics data can be generated at the single-cell
level. However, proteomics in this setting is still a big challenge. Despite the great …

Surfaceome mapping of primary human heart cells with CellSurfer uncovers cardiomyocyte surface protein LSMEM2 and proteome dynamics in failing hearts

L Berg Luecke, M Waas, J Littrell… - Nature cardiovascular …, 2023 - nature.com
Cardiac cell surface proteins are drug targets and useful biomarkers for discriminating
among cellular phenotypes and disease states. Here we developed an analytical platform …

Recent developments in mass-spectrometry-based targeted proteomics of clinical cancer biomarkers

D Wenk, C Zuo, T Kislinger, L Sepiashvili - Clinical Proteomics, 2024 - Springer
Routine measurement of cancer biomarkers is performed for early detection, risk
classification, and treatment monitoring, among other applications, and has substantially …