Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs

K Palos, L Yu, CE Railey, AC Nelson Dittrich… - The Plant …, 2023 - academic.oup.com
Long noncoding RNAs (lncRNAs) are a large and diverse class of genes in eukaryotic
genomes that contribute to a variety of regulatory processes. Functionally characterized …

Evaluation of efficacy of non-coding RNA in abiotic stress management of field crops: Current status and future prospective

S Hazra, D Moulick, A Mukherjee, S Sahib… - Plant Physiology and …, 2023 - Elsevier
Abiotic stresses are responsible for the major losses in crop yield all over the world. Stresses
generate harmful ROS which can impair cellular processes in plants. Therefore, plants have …

Genome-wide analysis of long non-coding RNAs unveils the regulatory roles in the heat tolerance of Chinese cabbage (Brassica rapa ssp.chinensis)

A Wang, J Hu, C Gao, G Chen, B Wang, C Lin… - Scientific reports, 2019 - nature.com
Long non-coding RNAs (lncRNAs) mediate important epigenetic regulation in various
biological processes related to the stress response in plants. However, the systematic …

LncRNA FLAIL affects alternative splicing and represses flowering in Arabidopsis

Y Jin, M Ivanov, AN Dittrich, ADL Nelson… - The EMBO …, 2023 - embopress.org
How the noncoding genome affects cellular functions is a key biological question. A
particular challenge is to distinguish the effects of noncoding DNA elements from long …

Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae

K Palos, AC Nelson Dittrich, L Yu, JR Brock… - The Plant …, 2022 - academic.oup.com
Long intergenic noncoding RNAs (lincRNAs) are a large yet enigmatic class of eukaryotic
transcripts that can have critical biological functions. The wealth of RNA-sequencing (RNA …

lncRNAs in plant and animal sexual reproduction

AA Golicz, PL Bhalla, MB Singh - Trends in plant science, 2018 - cell.com
Long noncoding RNAs (lncRNAs) are transcripts over 200 base pairs in length with no
discernible protein-coding potential. Multiple lines of evidence point to lncRNAs as master …

The genome of Cucurbita argyrosperma (silver-seed gourd) reveals faster rates of protein-coding gene and long noncoding RNA turnover and neofunctionalization …

J Barrera-Redondo, E Ibarra-Laclette, A Vázquez-Lobo… - Molecular plant, 2019 - cell.com
Whole-genome duplications are an important source of evolutionary novelties that change
the mode and tempo at which genetic elements evolve within a genome. The Cucurbita …

Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in …

L Liu, M Heidecker, T Depuydt… - Plant …, 2023 - academic.oup.com
Thousands of long intergenic noncoding RNAs (lincRNAs) have been identified in plant
genomes. While some lincRNAs have been characterized as important regulators in …

Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species

J Zhang, L Wei, J Jiang, AS Mason, H Li, C Cui… - Scientific reports, 2018 - nature.com
Non-coding RNA (ncRNA) is abundant in plant genomes, but is poorly described with
unknown functionality in most species. Using whole genome RNA sequencing, we identified …

A Conserved Long Intergenic Non-coding RNA Containing snoRNA Sequences, lncCOBRA1, Affects Arabidopsis Germination and Development

MC Kramer, HJ Kim, KR Palos, BA Garcia… - Frontiers in Plant …, 2022 - frontiersin.org
Long non-coding RNAs (lncRNAs) are an increasingly studied group of non-protein coding
transcripts with a wide variety of molecular functions gaining attention for their roles in …