Discovery of targets for immune–metabolic antitumor drugs identifies estrogen-related receptor alpha

A Sahu, X Wang, P Munson, JPG Klomp, X Wang… - Cancer discovery, 2023 - AACR
Drugs that kill tumors through multiple mechanisms have the potential for broad clinical
benefits. Here, we first developed an in silico multiomics approach (BipotentR) to find cancer …

SMAD3 promotes expression and activity of the androgen receptor in prostate cancer

HY Jeon, M Pornour, H Ryu, S Khadka… - Nucleic acids …, 2023 - academic.oup.com
Overexpression of androgen receptor (AR) is the primary cause of castration-resistant
prostate cancer, although mechanisms upregulating AR transcription in this context are not …

CHARGE syndrome-associated CHD7 acts at ISL1-regulated enhancers to modulate second heart field gene expression

A Stathopoulou, P Wang, C Thellier… - Cardiovascular …, 2023 - academic.oup.com
Aims Haploinsufficiency of the chromo-domain protein CHD7 underlies most cases of
CHARGE syndrome, a multisystem birth defect including congenital heart malformation …

Genome binding properties of Zic transcription factors underlie their changing functions during neuronal maturation

MS Minto, JE Sotelo-Fonseca, V Ramesh, AE West - BMC biology, 2024 - Springer
Abstract Background The Zic family of transcription factors (TFs) promote both proliferation
and maturation of cerebellar granule neurons (CGNs), raising the question of how a single …

MORA and EnsembleTFpredictor: An ensemble approach to reveal functional transcription factor regulatory networks

K Boyer, L Li, T Li, B Zhang, G Zhao - Plos one, 2023 - journals.plos.org
Motivation Our study aimed to identify biologically relevant transcription factors (TFs) that
control the expression of a set of co-expressed or co-regulated genes. Results We …

Integrated multi-omics analysis identifies features that predict human pluripotent stem cell-derived progenitor differentiation to cardiomyocytes

AD Simmons, C Baumann, X Zhang, TJ Kamp… - Journal of Molecular and …, 2024 - Elsevier
Human pluripotent stem cell-derived cardiomyocytes (hPSC-CMs) are advancing
cardiovascular development and disease modeling, drug testing, and regenerative …

Computational analysis of the divergent neurotranscriptomic signatures of major depression and suicidality

MJ Nishanth, SS Karthick, S Jha - Egyptian Journal of Medical Human …, 2024 - Springer
Background Suicide is a leading cause of death globally. Identifying individuals at higher
suicidal risk is a key to suicide prevention. Patients with comorbid psychiatric disorders …

[HTML][HTML] A genome-wide single-cell 3D genome atlas of lung cancer progression

M Liu, S Jin, SS Agabiti, TB Jensen, T Yang… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Alterations in three-dimensional (3D) genome structures are associated with cancer 1–5.
However, how genome folding evolves and diversifies during subclonal cancer progression …

BART Cancer: a web resource for transcriptional regulators in cancer genomes

ZV Thomas, Z Wang, C Zang - NAR cancer, 2021 - academic.oup.com
Dysregulation of gene expression plays an important role in cancer development. Identifying
transcriptional regulators, including transcription factors and chromatin regulators, that drive …

Computational analysis of crosstalk between transcriptional regulators and RNA-binding proteins suggests mutual regulation of polycomb proteins and SRSF1 …

MJ Nishanth, S Jha - Discover Mental Health, 2023 - Springer
Background Adult hippocampal neurogenesis (AHN) is a clinically significant neural
phenomenon. Understanding its molecular regulation would be important. In this regard …