Dynamic RNA modifications in gene expression regulation

IA Roundtree, ME Evans, T Pan, C He - Cell, 2017 - cell.com
Over 100 types of chemical modifications have been identified in cellular RNAs. While the
5′ cap modification and the poly (A) tail of eukaryotic mRNA play key roles in regulation …

Root of the tree: the significance, evolution, and origins of the ribosome

JC Bowman, AS Petrov, M Frenkel-Pinter… - Chemical …, 2020 - ACS Publications
The ribosome is an ancient molecular fossil that provides a telescope to the origins of life.
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …

Structure of the bacterial ribosome at 2 Å resolution

ZL Watson, FR Ward, R Méheust, O Ad, A Schepartz… - elife, 2020 - elifesciences.org
Using cryo-electron microscopy (cryo-EM), we determined the structure of the Escherichia
coli 70S ribosome with a global resolution of 2.0 Å. The maps reveal unambiguous …

Landscape of the complete RNA chemical modifications in the human 80S ribosome

M Taoka, Y Nobe, Y Yamaki, K Sato… - Nucleic acids …, 2018 - academic.oup.com
During ribosome biogenesis, ribosomal RNAs acquire various chemical modifications that
ensure the fidelity of translation, and dysregulation of the modification processes can cause …

Mechanism of membrane-tethered mitochondrial protein synthesis

Y Itoh, J Andréll, A Choi, U Richter, P Maiti, RB Best… - Science, 2021 - science.org
Mitochondrial ribosomes (mitoribosomes) are tethered to the mitochondrial inner membrane
to facilitate the cotranslational membrane insertion of the synthesized proteins. We report …

Structural basis of early translocation events on the ribosome

EJ Rundlet, M Holm, M Schacherl, SK Natchiar… - Nature, 2021 - nature.com
Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA
selection and translocation reactions that proceed rapidly (2–20 per second) and with a low …

Decoding mammalian ribosome-mRNA states by translational GTPase complexes

S Shao, J Murray, A Brown, J Taunton… - Cell, 2016 - cell.com
In eukaryotes, accurate protein synthesis relies on a family of translational GTPases that pair
with specific decoding factors to decipher the mRNA code on ribosomes. We present …

Assessing and maximizing data quality in macromolecular crystallography

PA Karplus, K Diederichs - Current opinion in structural biology, 2015 - Elsevier
Highlights•Common data quality indicators grouped as primary, secondary, or
wrong/misleading.•A gedanken experiment reveals shortcomings of some common …

Ribosome-dependent activation of stringent control

A Brown, IS Fernández, Y Gordiyenko… - Nature, 2016 - nature.com
In order to survive, bacteria continually sense, and respond to, environmental fluctuations.
Stringent control represents a key bacterial stress response to nutrient starvation, that leads …

Structural basis of transcription-translation coupling and collision in bacteria

MW Webster, M Takacs, C Zhu, V Vidmar, A Eduljee… - Science, 2020 - science.org
Prokaryotic messenger RNAs (mRNAs) are translated as they are transcribed. The lead
ribosome potentially contacts RNA polymerase (RNAP) and forms a supramolecular …