Variation and evolution of human centromeres: a field guide and perspective

KH Miga, IA Alexandrov - Annual review of genetics, 2021 - annualreviews.org
We are entering a new era in genomics where entire centromeric regions are accurately
represented in human reference assemblies. Access to these high-resolution maps will …

The complete sequence of a human genome

S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze… - Science, 2022 - science.org
Since its initial release in 2000, the human reference genome has covered only the
euchromatic fraction of the genome, leaving important heterochromatic regions unfinished …

Decoding the role of satellite DNA in genome architecture and plasticity—An evolutionary and clinical affair

S Louzada, M Lopes, D Ferreira, F Adega, A Escudeiro… - Genes, 2020 - mdpi.com
Repetitive DNA is a major organizational component of eukaryotic genomes, being
intrinsically related with their architecture and evolution. Tandemly repeated satellite DNAs …

Highly contiguous assemblies of 101 drosophilid genomes

BY Kim, JR Wang, DE Miller, O Barmina, E Delaney… - Elife, 2021 - elifesciences.org
Over 100 years of studies in Drosophila melanogaster and related species in the genus
Drosophila have facilitated key discoveries in genetics, genomics, and evolution. While high …

In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus

LG de Lima, FJ Ruiz-Ruano - Genome Biology and Evolution, 2022 - academic.oup.com
Abstract Satellite DNAs (SatDNA) are ubiquitously present in eukaryotic genomes and have
been recently associated with several biological roles. Understanding the evolution and …

Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes

CH Chang, LE Gregory, KE Gordon, CD Meiklejohn… - Elife, 2022 - elifesciences.org
Y chromosomes across diverse species convergently evolve a gene-poor, heterochromatic
organization enriched for duplicated genes, LTR retrotransposons, and satellite DNA …

Functional Significance of Satellite DNAs: Insights From Drosophila

AS Shatskikh, AA Kotov, VE Adashev… - Frontiers in cell and …, 2020 - frontiersin.org
Since their discovery more than 60 years ago, satellite repeats are still one of the most
enigmatic parts of eukaryotic genomes. Being non-coding DNA, satellites were earlier …

Three recent sex chromosome-to-autosome fusions in a Drosophila virilis strain with high satellite DNA content

JM Flynn, KB Hu, AG Clark - Genetics, 2023 - academic.oup.com
The karyotype, or number and arrangement of chromosomes, has varying levels of stability
across both evolution and disease. Karyotype changes often originate from DNA breaks …

CaBagE: A Ca s9-based Ba ck g round E limination strategy for targeted, long-read DNA sequencing

AD Wallace, TA Sasani, J Swanier, BL Gates… - PLoS …, 2021 - journals.plos.org
A substantial fraction of the human genome is difficult to interrogate with short-read DNA
sequencing technologies due to paralogy, complex haplotype structures, or tandem repeats …

The implications of satellite DNA instability on cellular function and evolution

JM Flynn, YM Yamashita - Seminars in Cell & Developmental Biology, 2024 - Elsevier
Abundant tandemly repeated satellite DNA is present in most eukaryotic genomes. Previous
limitations including a pervasive view that it was uninteresting junk DNA, combined with …