Analysing and interpreting DNA methylation data

C Bock - Nature Reviews Genetics, 2012 - nature.com
DNA methylation is an epigenetic mark that has suspected regulatory roles in a broad range
of biological processes and diseases. The technology is now available for studying DNA …

Genetic diversity in farm animals–a review

LF Groeneveld, JA Lenstra, H Eding, MA Toro… - Animal …, 2010 - Wiley Online Library
Domestication of livestock species and a long history of migrations, selection and adaptation
have created an enormous variety of breeds. Conservation of these genetic resources relies …

SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics

S Cabello-Aguilar, M Alame… - Nucleic acids …, 2020 - academic.oup.com
Single-cell transcriptomics offers unprecedented opportunities to infer the ligand–receptor
(LR) interactions underlying cellular networks. We introduce a new, curated LR database …

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

M Gulia-Nuss, AB Nuss, JM Meyer… - Nature …, 2016 - nature.com
Ticks transmit more pathogens to humans and animals than any other arthropod. We
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …

Epigenetic regulator miRNA pattern differences among SARS-CoV, SARS-CoV-2, and SARS-CoV-2 world-wide isolates delineated the mystery behind the epic …

MAAK Khan, MRU Sany, MS Islam… - Frontiers in genetics, 2020 - frontiersin.org
A detailed understanding of the molecular mechanism of SARS-CoV-2 pathogenesis is still
elusive, and there is a need to address its deadly nature and to design effective …

SMART 7: recent updates to the protein domain annotation resource

I Letunic, T Doerks, P Bork - Nucleic acids research, 2012 - academic.oup.com
Abstract SMART (Simple Modular Architecture Research Tool) is an online resource
(http://smart. embl. de/) for the identification and annotation of protein domains and the …

Human Splicing Finder: an online bioinformatics tool to predict splicing signals

FO Desmet, D Hamroun, M Lalande… - Nucleic acids …, 2009 - academic.oup.com
Thousands of mutations are identified yearly. Although many directly affect protein
expression, an increasing proportion of mutations is now believed to influence mRNA …

DECIPHER: database of chromosomal imbalance and phenotype in humans using ensembl resources

HV Firth, SM Richards, AP Bevan, S Clayton… - The American Journal of …, 2009 - cell.com
Many patients suffering from developmental disorders harbor submicroscopic deletions or
duplications that, by affecting the copy number of dosage-sensitive genes or disrupting …

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

JV Olsen, M Vermeulen, A Santamaria, C Kumar… - Science …, 2010 - science.org
Eukaryotic cells replicate by a complex series of evolutionarily conserved events that are
tightly regulated at defined stages of the cell division cycle. Progression through this cycle …

VISTA, a novel mouse Ig superfamily ligand that negatively regulates T cell responses

L Wang, R Rubinstein, JL Lines, A Wasiuk… - Journal of Experimental …, 2011 - rupress.org
The immunoglobulin (Ig) superfamily consists of many critical immune regulators, including
the B7 family ligands and receptors. In this study, we identify a novel and structurally distinct …