Long noncoding RNA and protein abundance in lncRNPs

M Wu, LZ Yang, LL Chen - Rna, 2021 - rnajournal.cshlp.org
Although long noncoding RNAs (lncRNAs) are generally expressed at low levels, emerging
evidence has revealed that many play important roles in gene regulation by a variety of …

Control of tumorigenesis and chemoresistance by the DEK oncogene

E Riveiro-Falkenbach, MS Soengas - Clinical cancer research, 2010 - AACR
Slight modifications of chromatin dynamics can translate into small-and large-scale changes
in DNA replication and DNA repair. Similarly, promoter usage and accessibility are tightly …

Mitotic chromosomes are compacted laterally by KIF4 and condensin and axially by topoisomerase IIα

K Samejima, I Samejima, P Vagnarelli, H Ogawa… - Journal of Cell …, 2012 - rupress.org
Mitotic chromosome formation involves a relatively minor condensation of the chromatin
volume coupled with a dramatic reorganization into the characteristic “X” shape. Here we …

Canonical poly (A) polymerase activity promotes the decay of a wide variety of mammalian nuclear RNAs

SM Bresson, OV Hunter, AC Hunter, NK Conrad - PLoS Genetics, 2015 - journals.plos.org
The human nuclear poly (A)-binding protein PABPN1 has been implicated in the decay of
nuclear noncoding RNAs (ncRNAs). In addition, PABPN1 promotes hyperadenylation by …

Son is essential for nuclear speckle organization and cell cycle progression

A Sharma, H Takata, K Shibahara… - Molecular biology of …, 2010 - Am Soc Cell Biol
Subnuclear organization and spatiotemporal regulation of pre-mRNA processing factors is
essential for the production of mature protein-coding mRNAs. We have discovered that a …

Imaging-based study demonstrates how the DEK nanoscale distribution differentially correlates with epigenetic marks in a breast cancer model

A Pierzynska-Mach, I Cainero, M Oneto… - Scientific Reports, 2023 - nature.com
Epigenetic dysregulation of chromatin is one of the hallmarks of cancer development and
progression, and it is continuously investigated as a potential general bio-marker of this …

Architectural alterations of the fission yeast genome during the cell cycle

H Tanizawa, KD Kim, O Iwasaki, K Noma - Nature structural & molecular …, 2017 - nature.com
Eukaryotic genomes are highly ordered through various mechanisms, including
topologically associating domain (TAD) organization. We employed an in situ Hi-C approach …

Involvement of condensin in cellular senescence through gene regulation and compartmental reorganization

O Iwasaki, H Tanizawa, KD Kim, A Kossenkov… - Nature …, 2019 - nature.com
Senescence is induced by various stimuli such as oncogene expression and telomere
shortening, referred to as oncogene-induced senescence (OIS) and replicative senescence …

AIRE: From promiscuous molecular partnerships to promiscuous gene expression

J Abramson, Y Goldfarb - European journal of immunology, 2016 - Wiley Online Library
Autoimmune regulator (AIRE) is a unique transcriptional regulator that induces promiscuous
expression of thousands of tissue‐restricted antigens (TRAs) in medullary thymic epithelial …

Stacking the DEK: from chromatin topology to cancer stem cells

LM Privette Vinnedge, F Kappes, N Nassar, SI Wells - Cell cycle, 2013 - Taylor & Francis
Stem cells are essential for development and tissue maintenance and display molecular
markers and functions distinct from those of differentiated cell types in a given tissue …