Intrinsically disordered proteins: an overview

R Trivedi, HA Nagarajaram - International journal of molecular sciences, 2022 - mdpi.com
Many proteins and protein segments cannot attain a single stable three-dimensional
structure under physiological conditions; instead, they adopt multiple interconverting …

Biological soft matter: intrinsically disordered proteins in liquid–liquid phase separation and biomolecular condensates

AV Fonin, IA Antifeeva, IM Kuznetsova… - Essays in …, 2022 - portlandpress.com
The facts that many proteins with crucial biological functions do not have unique structures
and that many biological processes are compartmentalized into the liquid-like biomolecular …

Analyzing IDPs in interactomes

VN Uversky - Intrinsically Disordered Proteins: Methods and …, 2020 - Springer
Intrinsically disordered proteins (IDPs) and regions (IDRs) are commonly found in all
proteomes analyzed so far. These proteins/regions are subject to numerous …

An ensemble approach to predict binding hotspots in protein–RNA interactions based on SMOTE data balancing and Random Grouping feature selection strategies

T Zhou, J Rong, Y Liu, W Gong, C Li - Bioinformatics, 2022 - academic.oup.com
Motivation The identification of binding hotspots in protein–RNA interactions is crucial for
understanding their potential recognition mechanisms and drug design. The experimental …

Engagement of intrinsic disordered proteins in protein–protein interaction

I Roterman, K Stapor, L Konieczny - Frontiers in Molecular …, 2023 - frontiersin.org
Proteins from the intrinsically disordered group (IDP) focus the attention of many researchers
engaged in protein structure analysis. The main criteria used in their identification are lack of …

Computational prediction of functions of intrinsically disordered regions

A Katuwawala, S Ghadermarzi, L Kurgan - Progress in Molecular Biology …, 2019 - Elsevier
Intrinsically disorder regions (IDRs) are abundant in nature, particularly among Eukaryotes.
While they facilitate a wide spectrum of cellular functions including signaling, molecular …

Prevalence and functionality of intrinsic disorder in human FG-nucleoporins

DL Lyngdoh, N Nag, VN Uversky, T Tripathi - International Journal of …, 2021 - Elsevier
The nuclear-cytoplasmic transport of biomolecules is assisted by the nuclear pores
composed of evolutionarily conserved proteins termed nucleoporins (Nups). The central …

XGBPRH: prediction of binding hot spots at protein–RNA interfaces utilizing extreme gradient boosting

L Deng, Y Sui, J Zhang - Genes, 2019 - mdpi.com
Hot spot residues at protein–RNA complexes are vitally important for investigating the
underlying molecular recognition mechanism. Accurately identifying protein–RNA binding …

Prediction of protein-protein interaction sites in intrinsically disordered proteins

R Chen, X Li, Y Yang, X Song, C Wang… - Frontiers in Molecular …, 2022 - frontiersin.org
Intrinsically disordered proteins (IDPs) participate in many biological processes by
interacting with other proteins, including the regulation of transcription, translation, and the …

Single-stranded and double-stranded DNA-binding protein prediction using HMM profiles

R Sharma, S Kumar, T Tsunoda, T Kumarevel… - Analytical …, 2021 - Elsevier
Background DNA-binding proteins perform important roles in cellular processes and are
involved in many biological activities. These proteins include crucial protein-DNA binding …