The next generation of CRISPR–Cas technologies and applications

A Pickar-Oliver, CA Gersbach - Nature reviews Molecular cell biology, 2019 - nature.com
The prokaryote-derived CRISPR–Cas genome editing systems have transformed our ability
to manipulate, detect, image and annotate specific DNA and RNA sequences in living cells …

CRISPRi and CRISPRa screens in mammalian cells for precision biology and medicine

M Kampmann - ACS chemical biology, 2018 - ACS Publications
Next-generation DNA sequencing technologies have led to a massive accumulation of
genomic and transcriptomic data from patients and healthy individuals. The major challenge …

An efficient KRAB domain for CRISPRi applications in human cells

N Alerasool, D Segal, H Lee, M Taipale - Nature methods, 2020 - nature.com
Clustered regularly interspaced short palindromic repeat interference (CRISPRi), based on
the fusion of inactive Cas9 (dCas9) to the Krüppel-associated box (KRAB) repressor, is a …

Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities

S Müller-Dott, E Tsirvouli, M Vazquez… - Nucleic acids …, 2023 - academic.oup.com
Gene regulation plays a critical role in the cellular processes that underlie human health and
disease. The regulatory relationship between transcription factors (TFs), key regulators of …

[HTML][HTML] CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes

LA Gilbert, MH Larson, L Morsut, Z Liu, GA Brar… - Cell, 2013 - cell.com
The genetic interrogation and reprogramming of cells requires methods for robust and
precise targeting of genes for expression or repression. The CRISPR-associated …

[HTML][HTML] Choosing the right tool for the job: RNAi, TALEN, or CRISPR

M Boettcher, MT McManus - Molecular cell, 2015 - cell.com
The most widely used approach for defining gene function is to reduce or completely disrupt
its normal expression. For over a decade, RNAi has ruled the lab, offering a magic bullet to …

Gene editing and CRISPR in the clinic: current and future perspectives

MP Hirakawa, R Krishnakumar, JA Timlin… - Bioscience …, 2020 - portlandpress.com
Genome editing technologies, particularly those based on zinc-finger nucleases (ZFNs),
transcription activator-like effector nucleases (TALENs), and CRISPR (clustered regularly …

Genome-editing technologies: principles and applications

T Gaj, SJ Sirk, S Shui, J Liu - Cold Spring Harbor …, 2016 - cshperspectives.cshlp.org
Targeted nucleases have provided researchers with the ability to manipulate virtually any
genomic sequence, enabling the facile creation of isogenic cell lines and animal models for …

Allele-selective transcriptional repression of mutant HTT for the treatment of Huntington's disease

B Zeitler, S Froelich, K Marlen, DA Shivak, Q Yu, D Li… - Nature medicine, 2019 - nature.com
Huntington's disease (HD) is a dominantly inherited neurodegenerative disorder caused by
a CAG trinucleotide expansion in the huntingtin gene (HTT), which codes for the pathologic …

[HTML][HTML] Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds

JG Zalatan, ME Lee, R Almeida, LA Gilbert… - Cell, 2015 - cell.com
Eukaryotic cells execute complex transcriptional programs in which specific loci throughout
the genome are regulated in distinct ways by targeted regulatory assemblies. We have …