Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations

L Fang, S Liu, M Liu, X Kang, S Lin, B Li, EE Connor… - BMC biology, 2019 - Springer
Background The functional annotation of genomes, including chromatin accessibility and
modifications, is important for understanding and effectively utilizing the increased amount of …

A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle

YL Lee, H Takeda, G Costa Monteiro Moreira… - PLoS …, 2021 - journals.plos.org
Clinical mastitis (CM) is an inflammatory disease occurring in the mammary glands of
lactating cows. CM is under genetic control, and a prominent CM resistance QTL located on …

Potential biomarkers for feed efficiency-related traits in nelore cattle identified by co-expression network and integrative genomics analyses

AO De Lima, JE Koltes, WJS Diniz… - Frontiers in …, 2020 - frontiersin.org
Feed efficiency helps to reduce environmental impacts from livestock production, improving
beef cattle profitability. We identified potential biomarkers (hub genes) for feed efficiency, by …

Efficient induction and sustenance of pluripotent stem cells from bovine somatic cells

VV Pillai, PP Koganti, TG Kei, S Gurung… - Biology …, 2021 - journals.biologists.com
Although derivation of naïve bovine embryonic stem cells is unachieved, the possibility for
generation of bovine induced pluripotent stem cells (biPSCs) has been generally reported …

Integrative analysis between genome-wide association study and expression quantitative trait loci reveals bovine muscle gene expression regulatory polymorphisms …

B Silva-Vignato, ASM Cesar, J Afonso… - Frontiers in …, 2022 - frontiersin.org
Understanding the architecture of gene expression is fundamental to unravel the molecular
mechanisms regulating complex traits in bovine, such as intramuscular fat content (IMF) and …

Network analysis uncovers putative genes affecting resistance to tick infestation in Braford cattle skin

DD Moré, FF Cardoso, MA Mudadu, W Malagó-Jr… - BMC genomics, 2019 - Springer
Background Genetic resistance in cattle is considered a suitable way to control tick burden
and its consequent losses for livestock production. Exploring tick-resistant (R) and tick …

Genome and Transcriptome-Wide Analysis of OsWRKY and OsNAC Gene Families in Oryza sativa and Their Response to White-Backed Planthopper Infestation

I Khan, R Jan, S Asaf, AL Khan, S Bilal, KM Kim… - International Journal of …, 2022 - mdpi.com
Plants are threatened by a wide variety of herbivorous insect assaults, and display a variety
of inherent and induced defenses that shield them against herbivore attacks. Looking at the …

Muscle allele-specific expression QTLs may affect meat quality traits in Bos indicus

JJ Bruscadin, MM de Souza, KS de Oliveira… - Scientific Reports, 2021 - nature.com
Single nucleotide polymorphisms (SNPs) located in transcript sequences showing allele-
specific expression (ASE SNPs) were previously identified in the Longissimus thoracis …

Network Analyses Predict Small RNAs That Might Modulate Gene Expression in the Testis and Epididymis of Bos indicus Bulls

AO De Lima, J Afonso, J Edson, E Marcellin… - Frontiers in …, 2021 - frontiersin.org
Spermatogenesis relies on complex molecular mechanisms, essential for the genesis and
differentiation of the male gamete. Germ cell differentiation starts at the testicular …

A review of the role of transcription factors in regulating adipogenesis and lipogenesis in beef cattle

BK Abebe, H Wang, A Li, L Zan - Journal of Animal Breeding …, 2024 - Wiley Online Library
In the past few decades, genomic selection and other refined strategies have been used to
increase the growth rate and lean meat production of beef cattle. Nevertheless, the fast …