In this paper, the Peyrard–Bishop–Dauxois model of DNA dynamics is discussed along with
the fractional effects of the M-truncated derivative and β-derivative. The Kudryashov's R …

Nucleic acids' physical properties have been investigated by theoretical methods based
both on fully atomistic representations and on coarse-grained models, eg, the worm-like …

Motivation The two strands of the DNA double helix locally and spontaneously separate and
recombine in living cells due to the inherent thermal DNA motion. This dynamics results in …

The influence of a single 2H/1H replacement on the frequency generation of different-size
bubbles in the human interferon alpha-17 gene (IFNA17) under various energies was …

In this study we derive analytically the equilibrium melting probabilities for basepairs of a
DNA molecule with a defect site. We assume that the defect is characterized by a change in …

The studies were carried out by the mathematical modeling of DNA mechanical
deformations. Numerical calculations done for the interferon alpha 17 gene, which consists …

Considering a one dimensional mesoscopic model for DNA, we focus on the upper bound
for the base pair fluctuations, a relevant parameter in computer simulations for which …

There is evidence that DNA breathing (spontaneous opening of the DNA strands) plays a
relevant role in the interactions of DNA with other molecules, and in particular in the …

Understanding the inherent timescales of large bubbles in DNA is critical to a thorough
comprehension of its physicochemical characteristics, as well as their potential role on helix …

We investigated the melting transition of deoxyribonucleic acid (DNA) embedded in a
Langevin fluctuation–dissipation thermal bath. Torsional effects were taken into …