Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom

HM Amemiya, J Schroeder, PL Freddolino - Transcription, 2021 - Taylor & Francis
Genome architecture has proven to be critical in determining gene regulation across almost
all domains of life. While many of the key components and mechanisms of eukaryotic …

Clusters of bacterial RNA polymerase are biomolecular condensates that assemble through liquid–liquid phase separation

AM Ladouceur, BS Parmar… - Proceedings of the …, 2020 - National Acad Sciences
Once described as mere “bags of enzymes,” bacterial cells are in fact highly organized, with
many macromolecules exhibiting nonuniform localization patterns. Yet the physical and …

Post-translational modification of nucleoid-associated proteins: an extra layer of functional modulation in bacteria?

IW Dilweg, RT Dame - Biochemical Society Transactions, 2018 - portlandpress.com
Post-translational modification (PTM) of histones has been investigated in eukaryotes for
years, revealing its widespread occurrence and functional importance. Many PTMs affect …

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

S Stella, D Cascio, RC Johnson - Genes & development, 2010 - genesdev.cshlp.org
The bacterial nucleoid-associated protein Fis regulates diverse reactions by bending DNA
and through DNA-dependent interactions with other control proteins and enzymes. In …

Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis

D Skoko, D Yoo, H Bai, B Schnurr, J Yan… - Journal of molecular …, 2006 - Elsevier
Fis, the most abundant DNA-binding protein in Escherichia coli during rapid growth, has
been suspected to play an important role in defining nucleoid structure. Using bulk-phase …

Molecular mechanism of facilitated dissociation of Fis protein from DNA

MY Tsai, B Zhang, W Zheng… - Journal of the American …, 2016 - ACS Publications
Fis protein is a nucleoid-associated protein that plays many roles in transcriptional
regulation and DNA site-specific recombination. In contrast to the naïve expectation based …

Major Nucleoid Proteins in the Structure and Function of the Escherichia coli Chromosome

RC Johnson, LM Johnson, JW Schmidt… - The bacterial …, 2004 - Wiley Online Library
This chapter focuses on the major nucleoid‐associated proteins and summarizes one's
current knowledge of how these proteins contribute to the structure of the nucleoid and …

The C-terminal domains of the RNA polymerase α subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 …

SM McLeod, SE Aiyar, RL Gourse… - Journal of molecular …, 2002 - Elsevier
Fis is a versatile transactivator that functions at many different promoters. Fis activates
transcription at the RpoS-dependent proP P2 promoter when bound to a site that overlaps …

Site‐specific DNA inversion by serine recombinases

RC Johnson - Mobile DNA III, 2015 - Wiley Online Library
Reversible site‐specific inversions of DNA segments occur within the genomes of many
bacteria and their phages. These reactions are catalyzed by a dedicated recombinase and …

The bacterial chromosome

MH Saier Jr - Critical Reviews in Biochemistry and Molecular …, 2008 - Taylor & Francis
Bacteria represent the vast majority of biological diversity found on Earth. In this review, we
focus on selected aspects of their genetic material, those providing insight into structural …