The role of regulatory variation in complex traits and disease

FW Albert, L Kruglyak - Nature Reviews Genetics, 2015 - nature.com
We are in a phase of unprecedented progress in identifying genetic loci that cause variation
in traits ranging from growth and fitness in simple organisms to disease in humans …

A framework for understanding gene expression plasticity and its influence on stress tolerance

HE Rivera, HE Aichelman, JE Fifer… - Molecular …, 2021 - Wiley Online Library
Phenotypic plasticity can serve as a stepping stone towards adaptation. Recently, studies
have shown that gene expression contributes to emergent stress responses such as thermal …

The many faces of pleiotropy

AB Paaby, MV Rockman - Trends in genetics, 2013 - cell.com
Pleiotropy is the well-established phenomenon of a single gene affecting multiple traits. It
has long played a central role in theoretical, experimental, and clinical research in genetics …

Genotype-by-environment interaction and plasticity: exploring genomic responses of plants to the abiotic environment

DL Des Marais, KM Hernandez… - Annual Review of …, 2013 - annualreviews.org
There is considerable interest in the occurrence and molecular mechanisms of phenotypic
plasticity and genotype-by-environment interactions (G× E) in plant populations. The …

Common genetic variants modulate pathogen-sensing responses in human dendritic cells

MN Lee, C Ye, AC Villani, T Raj, W Li, TM Eisenhaure… - Science, 2014 - science.org
Introduction Variation in an individual's response to environmental factors is likely to
influence susceptibility to complex human diseases. The genetic basis of such variation is …

Mapping complex disease traits with global gene expression

W Cookson, L Liang, G Abecasis, M Moffatt… - Nature Reviews …, 2009 - nature.com
Variation in gene expression is an important mechanism underlying susceptibility to
complex disease. The simultaneous genome-wide assay of gene expression and genetic …

Strong phenotypic plasticity limits potential for evolutionary responses to climate change

V Oostra, M Saastamoinen, BJ Zwaan… - Nature …, 2018 - nature.com
Phenotypic plasticity, the expression of multiple phenotypes from one genome, is a
widespread adaptation to short-term environmental fluctuations, but whether it facilitates …

Population dynamics and habitat sharing of natural populations of Caenorhabditis elegans and C. briggsae

MA Félix, F Duveau - BMC biology, 2012 - Springer
Abstract Background The nematode Caenorhabditis elegans is a major model organism in
laboratory biology. Very little is known, however, about its ecology, including where it …

Genomics of developmental plasticity in animals

E Lafuente, P Beldade - Frontiers in genetics, 2019 - frontiersin.org
Developmental plasticity refers to the property by which the same genotype produces
distinct phenotypes depending on the environmental conditions under which development …

R/qtl: high-throughput multiple QTL mapping

D Arends, P Prins, RC Jansen, KW Broman - Bioinformatics, 2010 - academic.oup.com
Motivation: R/qtl is free and powerful software for mapping and exploring quantitative trait
loci (QTL). R/qtl provides a fully comprehensive range of methods for a wide range of …