Harnessing the power of RADseq for ecological and evolutionary genomics

KR Andrews, JM Good, MR Miller, G Luikart… - Nature Reviews …, 2016 - nature.com
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genotyping of thousands of genetic markers for any …

Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …

Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

AP Fuentes‐Pardo, DE Ruzzante - Molecular ecology, 2017 - Wiley Online Library
Whole‐genome resequencing (WGR) is a powerful method for addressing fundamental
evolutionary biology questions that have not been fully resolved using traditional methods …

Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

Divergence and functional degradation of a sex chromosome-like supergene

EM Tuttle, AO Bergland, ML Korody, MS Brewer… - Current Biology, 2016 - cell.com
A major challenge in biology is to understand the genetic basis of adaptation. One
compelling idea is that groups of tightly linked genes (ie," supergenes"[1, 2]) facilitate …

Genomic landscape of drug response reveals mediators of anthelmintic resistance

SR Doyle, R Laing, D Bartley, A Morrison, N Holroyd… - Cell Reports, 2022 - cell.com
Like other pathogens, parasitic helminths can rapidly evolve resistance to drug treatment.
Understanding the genetic basis of anthelmintic drug resistance in parasitic nematodes is …

Measuring genetic differentiation from pool-seq data

V Hivert, R Leblois, EJ Petit, M Gautier, R Vitalis - Genetics, 2018 - academic.oup.com
The advent of high throughput sequencing and genotyping technologies enables the
comparison of patterns of polymorphisms at a very large number of markers. While the …

Conservation genomics of natural and managed populations: building a conceptual and practical framework

LM Benestan, AL Ferchaud, PA Hohenlohe, BA Garner… - 2016 - Wiley Online Library
The boom of massive parallel sequencing (MPS) technology and its applications in
conservation of natural and managed populations brings new opportunities and challenges …

A framework for incorporating evolutionary genomics into biodiversity conservation and management

A Hoffmann, P Griffin, S Dillon, R Catullo… - Climate Change …, 2015 - Springer
Evolutionary adaptation drives biodiversity. So far, however, evolutionary thinking has had
limited impact on plans to counter the effects of climate change on biodiversity and …

The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males

F Ayllon, E Kjærner-Semb, T Furmanek… - PLoS …, 2015 - journals.plos.org
Wild and domesticated Atlantic salmon males display large variation for sea age at sexual
maturation, which varies between 1–5 years. Previous studies have uncovered a genetic …