Estimation methods for heterogeneous cell population models in systems biology

S Waldherr - Journal of The Royal Society Interface, 2018 - royalsocietypublishing.org
Heterogeneity among individual cells is a characteristic and relevant feature of living
systems. A range of experimental techniques to investigate this heterogeneity is available …

A simple and flexible computational framework for inferring sources of heterogeneity from single-cell dynamics

L Dharmarajan, HM Kaltenbach, F Rudolf, J Stelling - Cell systems, 2019 - cell.com
Single-cell time-lapse data provide the means for disentangling sources of cell-to-cell and
intra-cellular variability, a key step for understanding heterogeneity in cell populations …

A nonlinear mixed-effects approach for the mechanistic interpretation of time-series transcriptomics data

T Etienne, C Roux, E Cinquemani, L Girbal… - 2022 - inria.hal.science
Mechanistic models are essential to unravel the molecular mechanisms driving cellular
responses. However, the integration of high-throughput data with mechanistic knowledge is …

A free-software educational tool for modeling gene expression in cell populations

BA Saavedra… - 2021 IEEE 2nd …, 2021 - ieeexplore.ieee.org
Biochemical reactions that take place inside cells can be modeled and approximated in a
practical way through differential equations. In silico, it is possible to study biological process …

Modeling, analysis and reduction of biological systems

S Casagranda - 2017 - theses.hal.science
This thesis deals with modeling, analysis and reduction of various biological models, with a
focus on gene regulatory networks in the bacterium E. coli. Different mathematical …

Desarrollo de una herramienta de software libre para el modelado de la expresión génica de poblaciones celulares

BA Saavedra Arce - 2021 - red.uao.edu.co
Resumen en español Los procesos biológico sal interior de las células, tales como la
expresión génica, son el resultado de una serie de interacciones entre diferentes tipos de …