[HTML][HTML] 2.0-MOOSE: Enabling massively parallel multiphysics simulation

AD Lindsay, DR Gaston, CJ Permann, JM Miller… - SoftwareX, 2022 - Elsevier
The last 2 years have been a period of unprecedented growth for the MOOSE community
and the software itself. The number of monthly visitors to the website has grown from just …

Computationally efficient multiscale neural networks applied to fluid flow in complex 3D porous media

JE Santos, Y Yin, H Jo, W Pan, Q Kang… - Transport in porous …, 2021 - Springer
The permeability of complex porous materials is of interest to many engineering disciplines.
This quantity can be obtained via direct flow simulation, which provides the most accurate …

Remapping in a recurrent neural network model of navigation and context inference

IIC Low, LM Giocomo, AH Williams - Elife, 2023 - elifesciences.org
Neurons in navigational brain regions provide information about position, orientation, and
speed relative to environmental landmarks. These cells also change their firing patterns …

Scan‐specific artifact reduction in k‐space (SPARK) neural networks synergize with physics‐based reconstruction to accelerate MRI

Y Arefeen, O Beker, J Cho, H Yu… - Magnetic resonance …, 2022 - Wiley Online Library
Purpose To develop a scan‐specific model that estimates and corrects k‐space errors made
when reconstructing accelerated MRI data. Methods Scan‐specific artifact reduction in k …

Current directions in combining simulation-based macromolecular modeling approaches with deep learning

VK Mulligan - Expert Opinion on Drug Discovery, 2021 - Taylor & Francis
Introduction: Structure-guided drug discovery relies on accurate computational methods for
modeling macromolecules. Simulations provide means of predicting macromolecular folds …

Convergence of SGD with momentum in the nonconvex case: A novel time window-based analysis

J Qiu, B Ma, A Milzarek - arXiv preprint arXiv:2405.16954, 2024 - arxiv.org
We propose a novel time window-based analysis technique to investigate the convergence
behavior of the stochastic gradient descent method with momentum (SGDM) in nonconvex …

Miffi: Improving the accuracy of CNN-based cryo-EM micrograph filtering with fine-tuning and Fourier space information

D Xu, N Ando - Journal of Structural Biology, 2024 - Elsevier
Efficient and high-accuracy filtering of cryo-electron microscopy (cryo-EM) micrographs is an
emerging challenge with the growing speed of data collection and sizes of datasets …

ArtiDock: fast and accurate machine learning approach to protein-ligand docking based on multimodal data augmentation

T Voitsitskyi, S Yesylevskyy, V Bdzhola, R Stratiichuk… - bioRxiv, 2024 - biorxiv.org
We present ArtiDock-the deep learning technique for predicting ligand poses in the protein
binding pockets (aka" AI docking"), which is based on augmenting inherently limited training …

Verfahrensentwicklung für Schaltzeitprognosen an verkehrsabhängigen Lichtsignalanlagen mit Hilfe maschinellen Lernens

LE Schneegans - 2024 - kobra.uni-kassel.de
Im urbanen Raum, insbesondere vor signalisierten Knotenpunkten, entstehen die meisten
Emissionen des Straßenverkehrs. Eine Möglichkeit, um diese Emissionen zu senken, sind …

[PDF][PDF] UAV-based Anomaly Detection via a novel Spatial-Temporal Transformer for Precision Agriculture

H Cheng, H Li, J Lian - 2024 - cad-journal.net
Low altitude security has gained widespread concern for its applications, eg, cropland
monitoring. In this work, an Internet of Drones architecture was firstly presented for low …