Machine learning-guided protein engineering

P Kouba, P Kohout, F Haddadi, A Bushuiev… - ACS …, 2023 - ACS Publications
Recent progress in engineering highly promising biocatalysts has increasingly involved
machine learning methods. These methods leverage existing experimental and simulation …

Artificial intelligence in drug toxicity prediction: recent advances, challenges, and future perspectives

TTV Tran, A Surya Wibowo, H Tayara… - Journal of chemical …, 2023 - ACS Publications
Toxicity prediction is a critical step in the drug discovery process that helps identify and
prioritize compounds with the greatest potential for safe and effective use in humans, while …

Machine learning toxicity prediction: latest advances by toxicity end point

CN Cavasotto, V Scardino - ACS omega, 2022 - ACS Publications
Machine learning (ML) models to predict the toxicity of small molecules have garnered great
attention and have become widely used in recent years. Computational toxicity prediction is …

[HTML][HTML] Application of artificial intelligence and machine learning in early detection of adverse drug reactions (ADRs) and drug-induced toxicity

S Yang, S Kar - Artificial Intelligence Chemistry, 2023 - Elsevier
Adverse drug reactions (ADRs) and drug-induced toxicity are major challenges in drug
discovery, threatening patient safety and dramatically increasing healthcare expenditures …

Deep learning-based conformal prediction of toxicity

J Zhang, U Norinder, F Svensson - Journal of chemical information …, 2021 - ACS Publications
Predictive modeling for toxicity can help reduce risks in a range of applications and
potentially serve as the basis for regulatory decisions. However, the utility of these …

Persistent spectral based ensemble learning (PerSpect-EL) for protein–protein binding affinity prediction

JJ Wee, K Xia - Briefings in Bioinformatics, 2022 - academic.oup.com
Protein–protein interactions (PPIs) play a significant role in nearly all cellular and biological
activities. Data-driven machine learning models have demonstrated great power in PPIs …

Artificial intelligence and cheminformatics tools: a contribution to the drug development and chemical science

I Saifi, BA Bhat, SS Hamdani, UY Bhat… - Journal of …, 2024 - Taylor & Francis
In the ever-evolving field of drug discovery, the integration of Artificial Intelligence (AI) and
Machine Learning (ML) with cheminformatics has proven to be a powerful combination …

Uncertainty quantification: Can we trust artificial intelligence in drug discovery?

J Yu, D Wang, M Zheng - Iscience, 2022 - cell.com
The problem of human trust is one of the most fundamental problems in applied artificial
intelligence in drug discovery. In silico models have been widely used to accelerate the …

Recent advances in toxicity prediction: applications of deep graph learning

Y Miao, H Ma, J Huang - Chemical Research in Toxicology, 2023 - ACS Publications
The development of new drugs is time-consuming and expensive, and as such, accurately
predicting the potential toxicity of a drug candidate is crucial in ensuring its safety and …

Capturing molecular interactions in graph neural networks: a case study in multi-component phase equilibrium

S Qin, S Jiang, J Li, P Balaprakash, RC Van Lehn… - Digital …, 2023 - pubs.rsc.org
Graph neural networks (GNNs) have been widely used for predicting molecular properties,
especially for single molecules. However, when treating multi-component systems, GNNs …