Control of protein stability by post-translational modifications

JM Lee, HM Hammarén, MM Savitski… - Nature …, 2023 - nature.com
Post-translational modifications (PTMs) can occur on specific amino acids localized within
regulatory domains of target proteins, which control a protein's stability. These regions …

Molecular mechanisms of early plant pattern-triggered immune signaling

TA DeFalco, C Zipfel - Molecular cell, 2021 - cell.com
All eukaryotic organisms have evolved sophisticated immune systems to appropriately
respond to biotic stresses. In plants and animals, a key part of this immune system is pattern …

An atlas of substrate specificities for the human serine/threonine kinome

JL Johnson, TM Yaron, EM Huntsman, A Kerelsky… - Nature, 2023 - nature.com
Protein phosphorylation is one of the most widespread post-translational modifications in
biology,. With advances in mass-spectrometry-based phosphoproteomics, 90,000 sites of …

Dissecting the role of protein phosphorylation: a chemical biology toolbox

T Bilbrough, E Piemontese, O Seitz - Chemical Society Reviews, 2022 - pubs.rsc.org
Protein phosphorylation is a crucial regulator of protein and cellular function, yet, despite
identifying an enormous number of phosphorylation sites, the role of most is still unclear …

WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs

Y Liao, J Wang, EJ Jaehnig, Z Shi… - Nucleic acids …, 2019 - academic.oup.com
WebGestalt is a popular tool for the interpretation of gene lists derived from large scale-
omics studies. In the 2019 update, WebGestalt supports 12 organisms, 342 gene identifiers …

The functional landscape of the human phosphoproteome

D Ochoa, AF Jarnuczak, C Viéitez, M Gehre… - Nature …, 2020 - nature.com
Protein phosphorylation is a key post-translational modification regulating protein function in
almost all cellular processes. Although tens of thousands of phosphorylation sites have …

Systematic discovery of biomolecular condensate-specific protein phosphorylation

S Sridharan, A Hernandez-Armendariz… - Nature Chemical …, 2022 - nature.com
Reversible protein phosphorylation is an important mechanism for regulating (dis) assembly
of biomolecular condensates. However, condensate-specific phosphosites remain largely …

Signaling pathways in cancer: therapeutic targets, combinatorial treatments, and new developments

HYK Yip, A Papa - Cells, 2021 - mdpi.com
Molecular alterations in cancer genes and associated signaling pathways are used to inform
new treatments for precision medicine in cancer. Small molecule inhibitors and monoclonal …

Deep learning in proteomics

B Wen, WF Zeng, Y Liao, Z Shi, SR Savage… - …, 2020 - Wiley Online Library
Proteomics, the study of all the proteins in biological systems, is becoming a data‐rich
science. Protein sequences and structures are comprehensively catalogued in online …

Personalized phosphoproteomics identifies functional signaling

EJ Needham, JR Hingst, BL Parker, KR Morrison… - Nature …, 2022 - nature.com
Protein phosphorylation dynamically integrates environmental and cellular information to
control biological processes. Identifying functional phosphorylation amongst the thousands …