MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

JD Tournier, R Smith, D Raffelt, R Tabbara… - Neuroimage, 2019 - Elsevier
MRtrix3 is an open-source, cross-platform software package for medical image processing,
analysis and visualisation, with a particular emphasis on the investigation of the brain using …

[HTML][HTML] Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review

F Zhang, A Daducci, Y He, S Schiavi, C Seguin… - Neuroimage, 2022 - Elsevier
Diffusion magnetic resonance imaging (dMRI) tractography is an advanced imaging
technique that enables in vivo reconstruction of the brain's white matter connections at …

An improved neuroanatomical model of the default-mode network reconciles previous neuroimaging and neuropathological findings

PN Alves, C Foulon, V Karolis, D Bzdok… - Communications …, 2019 - nature.com
The brain is constituted of multiple networks of functionally correlated brain areas, out of
which the default-mode network (DMN) is the largest. Most existing research into the DMN …

Delineating epileptogenic networks using brain imaging data and personalized modeling in drug-resistant epilepsy

HE Wang, M Woodman, P Triebkorn… - Science Translational …, 2023 - science.org
Precise estimates of epileptogenic zone networks (EZNs) are crucial for planning
intervention strategies to treat drug-resistant focal epilepsy. Here, we present the virtual …

Denoising of diffusion MRI using random matrix theory

J Veraart, DS Novikov, D Christiaens, B Ades-Aron… - Neuroimage, 2016 - Elsevier
We introduce and evaluate a post-processing technique for fast denoising of diffusion-
weighted MR images. By exploiting the intrinsic redundancy in diffusion MRI using universal …

[HTML][HTML] BrainStat: A toolbox for brain-wide statistics and multimodal feature associations

S Larivière, Ş Bayrak, RV de Wael, O Benkarim… - NeuroImage, 2023 - Elsevier
Abstract Analysis and interpretation of neuroimaging datasets has become a
multidisciplinary endeavor, relying not only on statistical methods, but increasingly on …

Diffusion MRI fiber tractography of the brain

B Jeurissen, M Descoteaux, S Mori… - NMR in …, 2019 - Wiley Online Library
The ability of fiber tractography to delineate non‐invasively the white matter fiber pathways
of the brain raises possibilities for clinical applications and offers enormous potential for …

Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data

B Jeurissen, JD Tournier, T Dhollander, A Connelly… - NeuroImage, 2014 - Elsevier
Constrained spherical deconvolution (CSD) has become one of the most widely used
methods to extract white matter (WM) fibre orientation information from diffusion-weighted …

[HTML][HTML] SANDI: a compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI

M Palombo, A Ianus, M Guerreri, D Nunes… - Neuroimage, 2020 - Elsevier
This work introduces a compartment-based model for apparent cell body (namely soma) and
neurite density imaging (SANDI) using non-invasive diffusion-weighted MRI (DW-MRI). The …

SIFT2: Enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography

RE Smith, JD Tournier, F Calamante, A Connelly - Neuroimage, 2015 - Elsevier
Diffusion MRI streamlines tractography allows for the investigation of the brain white matter
pathways non-invasively. However a fundamental limitation of this technology is its non …