Interpretation of differential gene expression results of RNA-seq data: review and integration
Differential gene expression (DGE) analysis is one of the most common applications of RNA-
sequencing (RNA-seq) data. This process allows for the elucidation of differentially …
sequencing (RNA-seq) data. This process allows for the elucidation of differentially …
Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Significant innovations in next-generation sequencing techniques and bioinformatics tools
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
Motivation: Detection of random errors and systematic biases is a crucial step of a robust
pipeline for processing high-throughput sequencing (HTS) data. Bioinformatics software …
pipeline for processing high-throughput sequencing (HTS) data. Bioinformatics software …
Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping
Abstract N 4-acetylcytidine (ac4C) is an ancient and highly conserved RNA modification that
is present on tRNA and rRNA and has recently been investigated in eukaryotic mRNA …
is present on tRNA and rRNA and has recently been investigated in eukaryotic mRNA …
[HTML][HTML] Macrophages promote anti-androgen resistance in prostate cancer bone disease
XF Li, C Selli, HL Zhou, J Cao, S Wu, RY Ma… - Journal of Experimental …, 2023 - rupress.org
Metastatic castration-resistant prostate cancer (PC) is the final stage of PC that acquires
resistance to androgen deprivation therapies (ADT). Despite progresses in understanding of …
resistance to androgen deprivation therapies (ADT). Despite progresses in understanding of …
microRNAs in the same clusters evolve to coordinately regulate functionally related genes
MicroRNAs (miRNAs) are endogenously expressed small noncoding RNAs. The genomic
locations of animal miRNAs are significantly clustered in discrete loci. We found duplication …
locations of animal miRNAs are significantly clustered in discrete loci. We found duplication …
[HTML][HTML] Robustness of differential gene expression analysis of RNA-seq
A Stupnikov, CE McInerney, KI Savage… - Computational and …, 2021 - Elsevier
Abstract RNA-sequencing (RNA-seq) is a relatively new technology that lacks
standardisation. RNA-seq can be used for Differential Gene Expression (DGE) analysis …
standardisation. RNA-seq can be used for Differential Gene Expression (DGE) analysis …
Schwann cells in the subcutaneous adipose tissue have neurogenic potential and can be used for regenerative therapies
Stem cell therapies for nervous system disorders are hindered by a lack of accessible
autologous sources of neural stem cells (NSCs). In this study, neural crest–derived Schwann …
autologous sources of neural stem cells (NSCs). In this study, neural crest–derived Schwann …
Different miRNA expression profiles between human breast cancer tumors and serum
J Zhu, Z Zheng, J Wang, J Sun, P Wang, X Cheng… - Frontiers in …, 2014 - frontiersin.org
A bunch of microRNAs (miRNAs) have been demonstrated to be aberrantly expressed in
cancer tumor tissue and serum. The miRNA signatures identified from the serum samples …
cancer tumor tissue and serum. The miRNA signatures identified from the serum samples …
[HTML][HTML] A pH/enzyme dual responsive PMB spatiotemporal release hydrogel promoting chronic wound repair
L Dong, C Huang, B Zhao, G Hu… - Journal of …, 2023 - jnanobiotechnology.biomedcentral …
Suppressing persistent multidrug-resistant (MDR) bacterial infections and excessive
inflammation is the key for treating chronic wounds. Therefore, developing a …
inflammation is the key for treating chronic wounds. Therefore, developing a …