Colloquium: Criticality and dynamical scaling in living systems

MA Munoz - Reviews of Modern Physics, 2018 - APS
A celebrated and controversial hypothesis suggests that some biological systems—parts,
aspects, or groups of them—may extract important functional benefits from operating at the …

[HTML][HTML] Concepts in Boolean network modeling: What do they all mean?

JD Schwab, SD Kühlwein, N Ikonomi, M Kühl… - Computational and …, 2020 - Elsevier
Boolean network models are one of the simplest models to study complex dynamic behavior
in biological systems. They can be applied to unravel the mechanisms regulating the …

Critical dynamics in genetic regulatory networks: examples from four kingdoms

E Balleza, ER Alvarez-Buylla, A Chaos, S Kauffman… - PLoS …, 2008 - journals.plos.org
The coordinated expression of the different genes in an organism is essential to sustain
functionality under the random external perturbations to which the organism might be …

[HTML][HTML] Boolean modelling as a logic-based dynamic approach in systems medicine

AA Hemedan, A Niarakis, R Schneider… - Computational and …, 2022 - Elsevier
Molecular mechanisms of health and disease are often represented as systems biology
diagrams, and the coverage of such representation constantly increases. These static …

Criticality distinguishes the ensemble of biological regulatory networks

BC Daniels, H Kim, D Moore, S Zhou, HB Smith… - Physical review …, 2018 - APS
The hypothesis that many living systems should exhibit near-critical behavior is well
motivated theoretically, and an increasing number of cases have been demonstrated …

Dynamical criticality: overview and open questions

A Roli, M Villani, A Filisetti, R Serra - Journal of Systems Science and …, 2018 - Springer
Abstract Systems that exhibit complex behaviours are often found in a particular dynamical
condition, poised between order and disorder. This observation is at the core of the so …

Criticality is an emergent property of genetic networks that exhibit evolvability

C Torres-Sosa, S Huang, M Aldana - 2012 - journals.plos.org
Accumulating experimental evidence suggests that the gene regulatory networks of living
organisms operate in the critical phase, namely, at the transition between ordered and …

A divide and conquer method for learning large fuzzy cognitive maps

W Stach, L Kurgan, W Pedrycz - Fuzzy Sets and Systems, 2010 - Elsevier
Fuzzy Cognitive Maps (FCMs) are a convenient tool for modeling and simulating dynamic
systems. FCMs were applied in a large number of diverse areas and have already gained …

On the dynamics of random Boolean networks subject to noise: attractors, ergodic sets and cell types

R Serra, M Villani, A Barbieri, SA Kauffman… - Journal of theoretical …, 2010 - Elsevier
The asymptotic dynamics of random Boolean networks subject to random fluctuations is
investigated. Under the influence of noise, the system can escape from the attractors of the …

On the criticality of adaptive Boolean network robots

M Braccini, A Roli, E Barbieri, SA Kauffman - Entropy, 2022 - mdpi.com
Systems poised at a dynamical critical regime, between order and disorder, have been
shown capable of exhibiting complex dynamics that balance robustness to external …