Proteomic and interactomic insights into the molecular basis of cell functional diversity

I Bludau, R Aebersold - Nature Reviews Molecular Cell Biology, 2020 - nature.com
The ability of living systems to adapt to changing conditions originates from their capacity to
change their molecular constitution. This is achieved by multiple mechanisms that modulate …

The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease

MM Babu - Biochemical Society Transactions, 2016 - portlandpress.com
In the 1960s, Christian Anfinsen postulated that the unique three-dimensional structure of a
protein is determined by its amino acid sequence. This work laid the foundation for the …

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Management Group Liefer Laura A. 51 Wetterstrand … - nature, 2007 - nature.com
We report the generation and analysis of functional data from multiple, diverse experiments
performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE …

Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

M Buljan, G Chalancon, S Eustermann, GP Wagner… - Molecular cell, 2012 - cell.com
Alternative inclusion of exons increases the functional diversity of proteins. Among
alternatively spliced exons, tissue-specific exons play a critical role in maintaining tissue …

What is a gene, post-ENCODE? History and updated definition

MB Gerstein, C Bruce, JS Rozowsky, D Zheng… - Genome …, 2007 - genome.cshlp.org
While sequencing of the human genome surprised us with how many protein-coding genes
there are, it did not fundamentally change our perspective on what a gene is. In contrast, the …

Ensembl 2009

TJP Hubbard, BL Aken, S Ayling… - Nucleic acids …, 2009 - academic.oup.com
Abstract The Ensembl project (http://www. ensembl. org) is a comprehensive genome
information system featuring an integrated set of genome annotation, databases, and other …

Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis

K Thorsen, KD Sørensen, AS Brems-Eskildsen… - Molecular & Cellular …, 2008 - ASBMB
Alternative splicing enhances proteome diversity and modulates cancer-associated proteins.
To identify tissue-and tumor-specific alternative splicing, we used the GeneChip Human …

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

M Gonzàlez-Porta, A Frankish, J Rung, J Harrow… - Genome biology, 2013 - Springer
Background RNA sequencing has opened new avenues for the study of transcriptome
composition. Significant evidence has accumulated showing that the human transcriptome …

Efficient production of multi-modified pigs for xenotransplantation by 'combineering', gene stacking and gene editing

K Fischer, S Kraner-Scheiber, B Petersen… - Scientific reports, 2016 - nature.com
Xenotransplantation from pigs could alleviate the shortage of human tissues and organs for
transplantation. Means have been identified to overcome hyperacute rejection and acute …

APPRIS: annotation of principal and alternative splice isoforms

JM Rodriguez, P Maietta, I Ezkurdia… - Nucleic acids …, 2013 - academic.oup.com
Here, we present APPRIS (http://appris. bioinfo. cnio. es), a database that houses
annotations of human splice isoforms. APPRIS has been designed to provide value to …