Cis-regulatory sequences in plants: their importance, discovery, and future challenges
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …
function to coordinate responses to developmental and environmental cues is of paramount …
Epigenetic regulation of thermomorphogenesis and heat stress tolerance
Many environmental conditions fluctuate and organisms need to respond effectively. This is
especially true for temperature cues that can change in minutes to seasons and often follow …
especially true for temperature cues that can change in minutes to seasons and often follow …
Position-dependent function of human sequence-specific transcription factors
SH Duttke, C Guzman, M Chang, NP Delos Santos… - Nature, 2024 - nature.com
Patterns of transcriptional activity are encoded in our genome through regulatory elements
such as promoters or enhancers that, paradoxically, contain similar assortments of …
such as promoters or enhancers that, paradoxically, contain similar assortments of …
[HTML][HTML] Epigenetic regulation of abiotic stress memory: maintaining the good things while they last
As sessile organisms, plants have evolved sophisticated ways to constantly gauge and
adapt to changing environmental conditions including extremes that may be harmful to their …
adapt to changing environmental conditions including extremes that may be harmful to their …
Alternative splicing and protein diversity: plants versus animals
S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …
development and employ diverse strategies to cope with the variations during diurnal cycles …
DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis
DNA methylation is a major epigenetic modification found across species and has a
profound impact on many biological processes. However, its influence on chromatin …
profound impact on many biological processes. However, its influence on chromatin …
Chloroplast gene expression: Recent advances and perspectives
Y Zhang, L Tian, C Lu - Plant Communications, 2023 - cell.com
Chloroplasts evolved from an ancient cyanobacterial endosymbiont more than 1.5 billion
years ago. During subsequent coevolution with the nuclear genome, the chloroplast …
years ago. During subsequent coevolution with the nuclear genome, the chloroplast …
The R-loop is a common chromatin feature of the Arabidopsis genome
W Xu, H Xu, K Li, Y Fan, Y Liu, X Yang, Q Sun - Nature plants, 2017 - nature.com
R-loops are functional structures in chromatin comprising one single-stranded DNA and a
DNA: RNA hybrid. Here, we report ssDRIP-seq, a single-strand DNA ligation-based library …
DNA: RNA hybrid. Here, we report ssDRIP-seq, a single-strand DNA ligation-based library …
Analysis of genetically diverse macrophages reveals local and domain-wide mechanisms that control transcription factor binding and function
Non-coding genetic variation is a major driver of phenotypic diversity and allows the
investigation of mechanisms that control gene expression. Here, we systematically …
investigation of mechanisms that control gene expression. Here, we systematically …
Identification and dynamic quantification of regulatory elements using total RNA
The spatial and temporal regulation of transcription initiation is pivotal for controlling gene
expression. Here, we introduce capped-small RNA-seq (csRNA-seq), which uses total RNA …
expression. Here, we introduce capped-small RNA-seq (csRNA-seq), which uses total RNA …