Current status of the AMOEBA polarizable force field

JW Ponder, C Wu, P Ren, VS Pande… - The journal of …, 2010 - ACS Publications
Molecular force fields have been approaching a generational transition over the past several
years, moving away from well-established and well-tuned, but intrinsically limited, fixed point …

Molecular properties of aqueous solutions: a focus on the collective dynamics of hydration water

L Comez, M Paolantoni, P Sassi, S Corezzi, A Morresi… - Soft Matter, 2016 - pubs.rsc.org
When a solute is dissolved in water, their mutual interactions determine the molecular
properties of the solute on one hand, and the structure and dynamics of the surrounding …

Long-range protein–water dynamics in hyperactive insect antifreeze proteins

K Meister, S Ebbinghaus, Y Xu… - Proceedings of the …, 2013 - National Acad Sciences
Antifreeze proteins (AFPs) are specific proteins that are able to lower the freezing point of
aqueous solutions relative to the melting point. Hyperactive AFPs, identified in insects, have …

Terahertz kerr effect of liquids

M Zhang, W Xiao, C Zhang, L Zhang - Sensors, 2022 - mdpi.com
In recent years, tremendous advancements have been made in various technologies such
as far-infrared, low-frequency Raman, and two-dimensional (2D) Raman terahertz (THz) …

Spatially heterogeneous surface water diffusivity around structured protein surfaces at equilibrium

R Barnes, S Sun, Y Fichou, FW Dahlquist… - Journal of the …, 2017 - ACS Publications
Hydration water on the surface of a protein is thought to mediate the thermodynamics of
protein–ligand interactions. For hydration water to play a role beyond modulating global …

Ultrafast dynamics and hydrogen-bond structure in aqueous solutions of model peptides

K Mazur, IA Heisler, SR Meech - The Journal of Physical …, 2010 - ACS Publications
The dynamics of water molecules in the hydration layers of proteins are critical for biological
function. Here the molecular dynamics in aqueous solutions of model hydrophilic and …

Hydration water dynamics near biological interfaces

ME Johnson, C Malardier-Jugroot… - The Journal of …, 2009 - ACS Publications
We performed classical molecular dynamics simulations using both fixed-charge and
polarizable water and protein force fields to contrast the hydration dynamics near hydrophilic …

Hydration and aggregation of a simple amino acid: The case of glycine

M Di Gioacchino, MA Ricci, S Imberti… - Journal of Molecular …, 2020 - Elsevier
Glycine is the smallest and simplest amino acid with several applications in the chemical
and pharmaceutical industries. To date, a wide conflicting literature about the hydration and …

Effects of co-solvents on peptide hydration water structure and dynamics

ME Johnson, C Malardier-Jugroot… - Physical Chemistry …, 2010 - pubs.rsc.org
We evaluate the molecular response of hydration water as a function of temperature and
proximity to the surface of the peptide N-acetyl-leucine-methylamide (NALMA) when in the …

Single particle dynamics of water confined in a hydrophobically modified MCM-41-S nanoporous matrix

A Faraone, KH Liu, CY Mou, Y Zhang… - The Journal of chemical …, 2009 - pubs.aip.org
The single particle dynamics of water confined in a hydrophobically modified MCM-41-S
sample has been studied using three high resolution quasielastic neutron scattering …