Plant organellar genomes: much done, much more to do

J Wang, S Kan, X Liao, J Zhou, LR Tembrock… - Trends in plant …, 2024 - cell.com
Plastids and mitochondria are the only organelles that possess genomes of endosymbiotic
origin. In recent decades, advances in sequencing technologies have contributed to a …

Genomic architectural variation of plant mitochondria—A review of multichromosomal structuring

ZQ Wu, XZ Liao, XN Zhang… - … of Systematics and …, 2022 - Wiley Online Library
Since the endosymbiont origin from α‐Proteobacteria, mitochondrial genomes have
undergone extremely divergent evolutionary trajectories among eukaryotic lineages …

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

M Uliano-Silva, JGRN Ferreira, K Krasheninnikova… - BMC …, 2023 - Springer
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb)
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …

Chloroplot: an online program for the versatile plotting of organelle genomes

S Zheng, P Poczai, J Hyvönen, J Tang… - Frontiers in …, 2020 - frontiersin.org
Understanding the complexity of genomic structures and their unique architecture is linked
with the power of visualization tools used to represent these features. Such tools should be …

Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca

Y Cheng, X He, S Priyadarshani, Y Wang, L Ye, C Shi… - BMC genomics, 2021 - Springer
Background Suaeda glauca (S. glauca) is a halophyte widely distributed in saline and sandy
beaches, with strong saline-alkali tolerance. It is also admired as a landscape plant with …

Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known …

YA Putintseva, EI Bondar, EP Simonov, VV Sharov… - BMC genomics, 2020 - Springer
Background Plant mitochondrial genomes (mitogenomes) can be structurally complex while
their size can vary from~ 222 Kbp in Brassica napus to 11.3 Mbp in Silene conica. To date …

DNA repair and the stability of the plant mitochondrial genome

N Chevigny, D Schatz-Daas, F Lotfi… - International Journal of …, 2020 - mdpi.com
The mitochondrion stands at the center of cell energy metabolism. It contains its own
genome, the mtDNA, that is a relic of its prokaryotic symbiotic ancestor. In plants, the …

Assembly of the complete mitochondrial genome of an endemic plant, Scutellaria tsinyunensis, revealed the existence of two conformations generated by a repeat …

J Li, Y Xu, Y Shan, X Pei, S Yong, C Liu, J Yu - Planta, 2021 - Springer
Main conclusion We assembled the complete mitochondrial genome of Scutellaria
tsinyunensis in this study. Repeat-mediated recombination resulted in the formation of two …

The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features

W Qi, YW Lim, A Patrignani, P Schläpfer… - …, 2022 - academic.oup.com
Abstract Background Cassava (Manihot esculenta) is an important clonally propagated food
crop in tropical and subtropical regions worldwide. Genetic gain by molecular breeding has …

Master graph: an essential integrated assembly model for the plant mitogenome based on a graph-based framework

W He, K Xiang, C Chen, J Wang… - Briefings in …, 2023 - academic.oup.com
Unlike the typical single circular structure of most animal mitochondrial genomes
(mitogenome), the drastic structural variation of plant mitogenomes is a result of a mixture of …