Modulation of cellular processes by histone and non-histone protein acetylation

M Shvedunova, A Akhtar - Nature reviews Molecular cell biology, 2022 - nature.com
Lysine acetylation is a widespread and versatile protein post-translational modification.
Lysine acetyltransferases and lysine deacetylases catalyse the addition or removal …

Pioneer factors as master regulators of the epigenome and cell fate

A Balsalobre, J Drouin - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Pioneer factors are transcription factors with the unique ability to initiate opening of closed
chromatin. The stability of cell identity relies on robust mechanisms that maintain the …

[HTML][HTML] Transient naive reprogramming corrects hiPS cells functionally and epigenetically

S Buckberry, X Liu, D Poppe, JP Tan, G Sun, J Chen… - Nature, 2023 - nature.com
Cells undergo a major epigenome reconfiguration when reprogrammed to human induced
pluripotent stem cells (hiPS cells). However, the epigenomes of hiPS cells and human …

Biophysical forces mediated by respiration maintain lung alveolar epithelial cell fate

K Shiraishi, PP Shah, MP Morley, C Loebel, GT Santini… - Cell, 2023 - cell.com
Lungs undergo mechanical strain during breathing, but how these biophysical forces affect
cell fate and tissue homeostasis are unclear. We show that biophysical forces through …

Lamina-associated domains: peripheral matters and internal affairs

N Briand, P Collas - Genome biology, 2020 - Springer
At the nuclear periphery, associations of chromatin with the nuclear lamina through lamina-
associated domains (LADs) aid functional organization of the genome. We review the …

The deployment of cell lineages that form the mammalian heart

SM Meilhac, ME Buckingham - Nature Reviews Cardiology, 2018 - nature.com
The function of the mammalian heart depends on the interplay between different cardiac cell
types. The deployment of these cells, with precise spatiotemporal regulation, is also …

Aberrant chromatin reorganization in cells from diseased fibrous connective tissue in response to altered chemomechanical cues

SJ Heo, S Thakur, X Chen, C Loebel, B Xia… - Nature biomedical …, 2023 - nature.com
Abstract Changes in the micro-environment of fibrous connective tissue can lead to
alterations in the phenotypes of tissue-resident cells, yet the underlying mechanisms are …

An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype

PP Shah, KC Keough, K Gjoni, GT Santini, RJ Abdill… - Genome biology, 2023 - Springer
Background Association of chromatin with lamin proteins at the nuclear periphery has
emerged as a potential mechanism to coordinate cell type-specific gene expression and …

Coaching from the sidelines: the nuclear periphery in genome regulation

A Buchwalter, JM Kaneshiro, MW Hetzer - Nature Reviews Genetics, 2019 - nature.com
The genome is packaged and organized nonrandomly within the 3D space of the nucleus to
promote efficient gene expression and to faithfully maintain silencing of heterochromatin …

Pathogenic LMNA variants disrupt cardiac lamina-chromatin interactions and de-repress alternative fate genes

PP Shah, W Lv, JH Rhoades, A Poleshko, D Abbey… - Cell Stem Cell, 2021 - cell.com
Pathogenic mutations in LAMIN A/C (LMNA) cause abnormal nuclear structure and
laminopathies. These diseases have myriad tissue-specific phenotypes, including dilated …