CRISPR-based genome editing through the lens of DNA repair

TS Nambiar, L Baudrier, P Billon, A Ciccia - Molecular cell, 2022 - cell.com
Genome editing technologies operate by inducing site-specific DNA perturbations that are
resolved by cellular DNA repair pathways. Products of genome editors include DNA breaks …

Geochemical negative emissions technologies: Part I. Review

JS Campbell, S Foteinis, V Furey, O Hawrot… - Frontiers in …, 2022 - frontiersin.org
Over the previous two decades, a diverse array of geochemical negative emissions
technologies (NETs) have been proposed, which use alkaline minerals for removing and …

Engineered bacterial orthogonal DNA replication system for continuous evolution

R Tian, R Zhao, H Guo, K Yan, C Wang, C Lu… - Nature Chemical …, 2023 - nature.com
Continuous evolution can generate biomolecules for synthetic biology and enable
evolutionary investigation. The orthogonal DNA replication system (OrthoRep) in yeast can …

Resolving the structure of phage–bacteria interactions in the context of natural diversity

KM Kauffman, WK Chang, JM Brown… - Nature …, 2022 - nature.com
Microbial communities are shaped by viral predators. Yet, resolving which viruses (phages)
and bacteria are interacting is a major challenge in the context of natural levels of microbial …

Genetic engineering of bacteriophages: Key concepts, strategies, and applications

W Hussain, X Yang, M Ullah, H Wang, A Aziz… - Biotechnology …, 2023 - Elsevier
Bacteriophages are the most abundant biological entity in the world and hold a tremendous
amount of unexplored genetic information. Since their discovery, phages have drawn a great …

Towards next-generation cell factories by rational genome-scale engineering

S Yilmaz, A Nyerges, J van der Oost, GM Church… - Nature Catalysis, 2022 - nature.com
Metabolic engineering holds the promise to transform the chemical industry and to support
the transition into a circular bioeconomy, by engineering cellular biocatalysts that efficiently …

High-throughput functional variant screens via in vivo production of single-stranded DNA

MG Schubert, DB Goodman… - Proceedings of the …, 2021 - National Acad Sciences
Creating and characterizing individual genetic variants remains limited in scale, compared
to the tremendous variation both existing in nature and envisioned by genome engineers …

Bacterial genome engineering using CRISPR-associated transposases

DR Gelsinger, PLH Vo, SE Klompe, C Ronda… - Nature …, 2024 - nature.com
Clustered regularly interspaced short palindromic repeats (CRISPR)-associated
transposases have the potential to transform the technology landscape for kilobase-scale …

Continuous multiplexed phage genome editing using recombitrons

CB Fishman, KD Crawford, S Bhattarai-Kline… - Nature …, 2024 - nature.com
Bacteriophage genome editing can enhance the efficacy of phages to eliminate pathogenic
bacteria in patients and in the environment. However, current methods for editing phage …

Recent advances in non-model bacterial chassis construction

S Hwang, C Joung, W Kim, B Palsson… - Current Opinion in Systems …, 2023 - Elsevier
The development of bacterial chassis to increase productivity and reduce industrial costs in
value-added biochemical production has gained significant attention. Current efforts have …