Co-transcriptional gene regulation in eukaryotes and prokaryotes
M Shine, J Gordon, L Schärfen, D Zigackova… - … Reviews Molecular Cell …, 2024 - nature.com
Many steps of RNA processing occur during transcription by RNA polymerases. Co-
transcriptional activities are deemed commonplace in prokaryotes, in which the lack of …
transcriptional activities are deemed commonplace in prokaryotes, in which the lack of …
Regulation of mRNA stability during bacterial stress responses
DA Vargas-Blanco, SS Shell - Frontiers in microbiology, 2020 - frontiersin.org
Bacteria have a remarkable ability to sense environmental changes, swiftly regulating their
transcriptional and posttranscriptional machinery as a response. Under conditions that …
transcriptional and posttranscriptional machinery as a response. Under conditions that …
Hepatitis C virus RNA is 5′-capped with flavin adenine dinucleotide
AV Sherwood, LR Rivera-Rangel, LA Ryberg… - Nature, 2023 - nature.com
RNA viruses have evolved elaborate strategies to protect their genomes, including 5′
capping. However, until now no RNA 5′ cap has been identified for hepatitis C virus,(HCV) …
capping. However, until now no RNA 5′ cap has been identified for hepatitis C virus,(HCV) …
Recent insights into noncanonical 5′ capping and decapping of RNA
The 5′ N 7-methylguanosine cap is a critical modification for mRNAs and many other RNAs
in eukaryotic cells. Recent studies have uncovered an RNA 5′ capping quality surveillance …
in eukaryotic cells. Recent studies have uncovered an RNA 5′ capping quality surveillance …
Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase
Bacterial and eukaryotic nuclear RNA polymerases (RNAPs) cap RNA with the oxidized and
reduced forms of the metabolic effector nicotinamide adenine dinucleotide, NAD+ and …
reduced forms of the metabolic effector nicotinamide adenine dinucleotide, NAD+ and …
Toll/interleukin-1 receptor (TIR) domain-containing proteins have NAD-RNA decapping activity
The occurrence of NAD+ as a non-canonical RNA cap has been demonstrated in diverse
organisms. TIR domain-containing proteins present in all kingdoms of life act in defense …
organisms. TIR domain-containing proteins present in all kingdoms of life act in defense …
Identification, biosynthesis, and decapping of NAD-capped RNAs in B. subtilis
J Frindert, Y Zhang, G Nübel, M Kahloon, L Kolmar… - Cell Reports, 2018 - cell.com
The ubiquitous coenzyme nicotinamide adenine dinucleotide (NAD) decorates various
RNAs in different organisms. In the proteobacterium Escherichia coli, the NAD-cap confers …
RNAs in different organisms. In the proteobacterium Escherichia coli, the NAD-cap confers …
NAD tagSeq reveals that NAD+-capped RNAs are mostly produced from a large number of protein-coding genes in Arabidopsis
The 5′ end of a eukaryotic mRNA transcript generally has a 7-methylguanosine (m7G) cap
that protects mRNA from degradation and mediates almost all other aspects of gene …
that protects mRNA from degradation and mediates almost all other aspects of gene …
ONE-seq: epitranscriptome and gene-specific profiling of NAD-capped RNA
K Niu, J Zhang, S Ge, D Li, K Sun, Y You… - Nucleic Acids …, 2023 - academic.oup.com
The hub metabolite, nicotinamide adenine dinucleotide (NAD), can be used as an initiating
nucleotide in RNA synthesis to result in NAD-capped RNAs (NAD-RNA). Since NAD has …
nucleotide in RNA synthesis to result in NAD-capped RNAs (NAD-RNA). Since NAD has …
[HTML][HTML] The enigmatic epitranscriptome of bacteriophages: putative RNA modifications in viral infections
N Pozhydaieva, M Wolfram-Schauerte… - Current Opinion in …, 2024 - Elsevier
Highlights•RNA can be modified by diverse internal and terminal modifications.•Bacteria and
bacteriophage RNA polymerases can install RNA modifications.•Bacterial enzymes remove …
bacteriophage RNA polymerases can install RNA modifications.•Bacterial enzymes remove …