Dual role of the histone variant H2A. Z in transcriptional regulation of stress-response genes

W Sura, M Kabza, WM Karlowski, T Bieluszewski… - The Plant …, 2017 - academic.oup.com
The influence of the histone variant H2A. Z on transcription remains a long-standing
conundrum. Here, by analyzing the actin-related protein6 mutant, which is impaired in H2A …

[HTML][HTML] Insights into nucleosome organization in mouse embryonic stem cells through chemical mapping

LN Voong, L Xi, AC Sebeson, B Xiong, JP Wang… - Cell, 2016 - cell.com
Nucleosome organization influences gene activity by controlling DNA accessibility to
transcription machinery. Here, we develop a chemical biology approach to determine …

Topoisomerase 1 facilitates nucleosome reassembly at stress genes during recovery

M Vega, R Barrios, R Fraile… - Nucleic Acids …, 2023 - academic.oup.com
Chromatin remodeling is essential to allow full development of alternative gene expression
programs in response to environmental changes. In fission yeast, oxidative stress triggers …

Dissecting the cis-regulatory syntax of transcription initiation with deep learning

K Cochran, M Yin, A Mantripragada, J Schreiber… - …, 2024 - pmc.ncbi.nlm.nih.gov
Despite extensive characterization of mammalian Pol II transcription, the DNA sequence
determinants of transcription initiation at a third of human promoters and most enhancers …

The Greatwall-Endosulfine-PP2A/B55 pathway regulates entry into quiescence by enhancing translation of Elongator-tunable transcripts

J Encinar del Dedo, MB Suárez, LS Segundo… - Nature …, 2024 - nature.com
Quiescent cells require a continuous supply of proteins to maintain protein homeostasis. In
fission yeast, entry into quiescence is triggered by nitrogen stress, leading to the inactivation …

Local potentiation of stress-responsive genes by upstream noncoding transcription

N Takemata, A Oda, T Yamada, J Galipon… - Nucleic acids …, 2016 - academic.oup.com
It has been postulated that a myriad of long noncoding RNAs (lncRNAs) contribute to gene
regulation. In fission yeast, glucose starvation triggers lncRNA transcription across promoter …

Chromatin-mediated regulators of meiotic recombination revealed by proteomics of a recombination hotspot

AJ Storey, HP Wang, RU Protacio, MK Davidson… - Epigenetics & …, 2018 - Springer
Background Meiotic recombination hotspots control the frequency and distribution of Spo11
(Rec12)-initiated recombination in the genome. Recombination occurs within and is …

Diverse DNA sequence motifs activate meiotic recombination hotspots through a common chromatin remodeling pathway

TO Mukiza, RU Protacio, MK Davidson, WW Steiner… - Genetics, 2019 - academic.oup.com
Homologous recombination is induced to high levels in meiosis and is clustered at hotspots
that regulate its frequency and distribution in the genome. By studying five different classes …

Phosphorylation of the transcription factor Atf1 at multiple sites by the MAP kinase Sty1 controls homologous recombination and transcription

L Sánchez-Mir, R Fraile, J Ayté, E Hidalgo - Journal of molecular biology, 2020 - Elsevier
Transcription factors are often the downstream effectors of signaling cascades. In fission
yeast, the transcription factor Atf1 is phosphorylated by the MAP kinase Sty1 under several …

A stress-blinded Atf1 can fully assemble heterochromatin in a RNAi-independent minimal mat locus but impairs directionality of mat2/3 switching

R Fraile, L Sánchez-Mir, G Murciano-Julià, J Ayté… - Iscience, 2022 - cell.com
The MAP kinase Sty1 phosphorylates and activates the transcription factor Atf1 in response
to several stress conditions, which then shifts from a transcriptional repressor to an activator …