Contribution of phenylpropanoid metabolism to plant development and plant–environment interactions

NQ Dong, HX Lin - Journal of integrative plant biology, 2021 - Wiley Online Library
Phenylpropanoid metabolism is one of the most important metabolisms in plants, yielding
more than 8,000 metabolites contributing to plant development and plant–environment …

Metabolomics as an emerging tool for the study of plant–pathogen interactions

FR Castro-Moretti, IN Gentzel, D Mackey, AP Alonso - Metabolites, 2020 - mdpi.com
Plants defend themselves from most microbial attacks via mechanisms including cell wall
fortification, production of antimicrobial compounds, and generation of reactive oxygen …

Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors

X Tu, MK Mejía-Guerra, JA Valdes Franco… - Nature …, 2020 - nature.com
The transcription regulatory network inside a eukaryotic cell is defined by the combinatorial
actions of transcription factors (TFs). However, TF binding studies in plants are too few in …

[HTML][HTML] Biosynthesis regulation of folates and phenols in plants

A Kołton, O Długosz-Grochowska, R Wojciechowska… - Scientia …, 2022 - Elsevier
The latest knowledge regarding biosynthesis of folates and polyphenols is summarized,
including factors modulating their accumulation in plants, with particular emphasis on light …

Haplotype-resolved genome of diploid ginger (Zingiber officinale) and its unique gingerol biosynthetic pathway

HL Li, L Wu, Z Dong, Y Jiang, S Jiang… - Horticulture …, 2021 - academic.oup.com
Ginger (Zingiber officinale), the type species of Zingiberaceae, is one of the most
widespread medicinal plants and spices. Here, we report a high-quality, chromosome-scale …

ChIP-Hub provides an integrative platform for exploring plant regulome

LY Fu, T Zhu, X Zhou, R Yu, Z He, P Zhang… - Nature …, 2022 - nature.com
Plant genomes encode a complex and evolutionary diverse regulatory grammar that forms
the basis for most life on earth. A wealth of regulome and epigenome data have been …

Complex evolution of novel red floral color in Petunia

AE Berardi, K Esfeld, L Jäggi, T Mandel… - The plant …, 2021 - academic.oup.com
Red flower color has arisen multiple times and is generally associated with hummingbird
pollination. The majority of evolutionary transitions to red color proceeded from purple …

Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Populus trichocarpa

H Chen, JP Wang, H Liu, H Li, YCJ Lin, R Shi… - The Plant …, 2019 - academic.oup.com
Wood remains the world's most abundant and renewable resource for timber and pulp and
is an alternative to fossil fuels. Understanding the molecular regulation of wood formation …

Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity

Y Ding, PR Weckwerth, E Poretsky, KM Murphy, J Sims… - Nature plants, 2020 - nature.com
Specialized metabolites constitute key layers of immunity that underlie disease resistance in
crops; however, challenges in resolving pathways limit our understanding of the functions …

A translatome-transcriptome multi-omics gene regulatory network reveals the complicated functional landscape of maize

W Zhu, X Miao, J Qian, S Chen, Q Jin, M Li, L Han… - Genome Biology, 2023 - Springer
Abstract Background Maize (Zea mays L.) is one of the most important crops worldwide.
Although sophisticated maize gene regulatory networks (GRNs) have been constructed for …