Promises and challenges of crop translational genomics
Crop translational genomics applies breeding techniques based on genomic datasets to
improve crops. Technological breakthroughs in the past ten years have made it possible to …
improve crops. Technological breakthroughs in the past ten years have made it possible to …
Recent Advances in Assembly of Complex Plant Genomes
W Kong, Y Wang, S Zhang, J Yu… - Genomics, Proteomics & …, 2023 - academic.oup.com
Over the past 20 years, tremendous advances in sequencing technologies and
computational algorithms have spurred plant genomic research into a thriving era with …
computational algorithms have spurred plant genomic research into a thriving era with …
Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield
B Liao, X Shen, L Xiang, S Guo, S Chen, Y Meng… - Molecular plant, 2022 - cell.com
Artemisia annua is the major natural source of artemisinin, an anti-malarial medicine
commonly used worldwide. Here, we present chromosome-level haploid maps for two A …
commonly used worldwide. Here, we present chromosome-level haploid maps for two A …
A unified framework to analyze transposable element insertion polymorphisms using graph genomes
Transposable elements are ubiquitous mobile DNA sequences generating insertion
polymorphisms, contributing to genomic diversity. We present GraffiTE, a flexible pipeline to …
polymorphisms, contributing to genomic diversity. We present GraffiTE, a flexible pipeline to …
Haplotype-resolved genome of heterozygous African cassava cultivar TMEB117 (Manihot esculenta)
Abstract Cassava (Manihot esculenta Crantz) is a vital tropical root crop providing essential
dietary energy to over 800 million people in tropical and subtropical regions. As a climate …
dietary energy to over 800 million people in tropical and subtropical regions. As a climate …
[HTML][HTML] CRISPR/Cas9-generated mutations in a sugar transporter gene reduce cassava susceptibility to bacterial blight
K Elliott, KM Veley, G Jensen, KB Gilbert… - Plant …, 2024 - pmc.ncbi.nlm.nih.gov
Bacteria from the genus Xanthomonas are prolific phytopathogens that elicit disease in over
400 plant species. Xanthomonads carry a repertoire of specialized proteins called …
400 plant species. Xanthomonads carry a repertoire of specialized proteins called …
Whole-genome long-read TAPS deciphers DNA methylation patterns at base resolution using PacBio SMRT sequencing technology
Long-read sequencing provides valuable information on difficult-to-map genomic regions,
which can complement short-read sequencing to improve genome assembly, yet limited …
which can complement short-read sequencing to improve genome assembly, yet limited …
Exploring pan-genomes: an overview of resources and tools for unraveling structure, function, and evolution of crop genes and genomes
The availability of multiple sequenced genomes from a single species made it possible to
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
explore intra-and inter-specific genomic comparisons at higher resolution and build clade …
Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes
U Nakandala, AK Masouleh, MW Smith… - Horticulture …, 2023 - academic.oup.com
Recent advances in genome sequencing and assembly techniques have made it possible to
achieve chromosome level reference genomes for citrus. Relatively few genomes have …
achieve chromosome level reference genomes for citrus. Relatively few genomes have …
[HTML][HTML] Mutations in DNA polymerase δ subunit 1 co-segregate with CMD2-type resistance to Cassava Mosaic Geminiviruses
Cassava mosaic disease (CMD) suppresses cassava yields across the tropics. The
dominant CMD2 locus confers resistance to cassava mosaic geminiviruses. It has been …
dominant CMD2 locus confers resistance to cassava mosaic geminiviruses. It has been …