G-quadruplexes and their regulatory roles in biology

D Rhodes, HJ Lipps - Nucleic acids research, 2015 - academic.oup.com
Abstract 'If G-quadruplexes form so readily in vitro, Nature will have found a way of using
them in vivo'(Statement by Aaron Klug over 30 years ago). During the last decade, four …

Low-affinity binding sites and the transcription factor specificity paradox in eukaryotes

JF Kribelbauer, C Rastogi… - Annual review of cell …, 2019 - annualreviews.org
Eukaryotic transcription factors (TFs) from the same structural family tend to bind similar DNA
sequences, despite the ability of these TFs to execute distinct functions in vivo. The cell …

DNA mismatches reveal conformational penalties in protein–DNA recognition

A Afek, H Shi, A Rangadurai, H Sahay, A Senitzki… - Nature, 2020 - nature.com
Transcription factors recognize specific genomic sequences to regulate complex gene-
expression programs. Although it is well-established that transcription factors bind to specific …

An NMR view of protein dynamics in health and disease

A Sekhar, LE Kay - Annual review of biophysics, 2019 - annualreviews.org
Biological molecules are often highly dynamic, and this flexibility can be critical for function.
The large range of sampled timescales and the fact that many of the conformers that are …

Visualizing transient Watson–Crick-like mispairs in DNA and RNA duplexes

IJ Kimsey, K Petzold, B Sathyamoorthy, ZW Stein… - Nature, 2015 - nature.com
Rare tautomeric and anionic nucleobases are believed to have fundamental biological
roles, but their prevalence and functional importance has remained elusive because they …

Structure and luminescence of DNA-templated silver clusters

A Gonzalez-Rosell, C Cerretani, P Mastracco… - Nanoscale …, 2021 - pubs.rsc.org
DNA serves as a versatile template for few-atom silver clusters and their organized self-
assembly. These clusters possess unique structural and photophysical properties that are …

Chemical exchange in biomacromolecules: past, present, and future

AG Palmer III - Journal of magnetic resonance, 2014 - Elsevier
The perspective reviews quantitative investigations of chemical exchange phenomena in
proteins and other biological macromolecules using NMR spectroscopy, particularly …

Protein dynamics and function from solution state NMR spectroscopy

M Kovermann, P Rogne, M Wolf-Watz - Quarterly reviews of …, 2016 - cambridge.org
It is well-established that dynamics are central to protein function; their importance is
implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of …

NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers

A Sekhar, LE Kay - Proceedings of the National Academy of …, 2013 - National Acad Sciences
The importance of dynamics to biomolecular function is becoming increasingly clear. A
description of the structure–function relationship must, therefore, include the role of motion …

Hierarchy of RNA functional dynamics

AM Mustoe, CL Brooks… - Annual review of …, 2014 - annualreviews.org
RNA dynamics play a fundamental role in many cellular functions. However, there is no
general framework to describe these complex processes, which typically consist of many …