Principles of genome folding into topologically associating domains

Q Szabo, F Bantignies, G Cavalli - Science advances, 2019 - science.org
Understanding the mechanisms that underlie chromosome folding within cell nuclei is
essential to determine the relationship between genome structure and function. The recent …

Structural variants and speciation: multiple processes at play

EL Berdan, TG Aubier, S Cozzolino… - Cold Spring …, 2024 - cshperspectives.cshlp.org
Research on the genomic architecture of speciation has increasingly revealed the
importance of structural variants (SVs) that affect the presence, abundance, position, and/or …

Evolution of the ancestral mammalian karyotype and syntenic regions

J Damas, M Corbo, J Kim… - Proceedings of the …, 2022 - National Acad Sciences
Decrypting the rearrangements that drive mammalian chromosome evolution is critical to
understanding the molecular bases of speciation, adaptation, and disease susceptibility …

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility

WC Warren, RA Harris, M Haukness, IT Fiddes… - Science, 2020 - science.org
INTRODUCTION The rhesus macaque (Macaca mulatta) is one of the most widely used
nonhuman primate (NHP) models for studying human biology and disease. As a …

Topological structures and syntenic conservation in sea anemone genomes

B Zimmermann, JD Montenegro, SMC Robb… - Nature …, 2023 - nature.com
There is currently little information about the evolution of gene clusters, genome
architectures and karyotypes in early branching animals. Slowly evolving anthozoan …

A map of cis-regulatory elements and 3D genome structures in zebrafish

H Yang, Y Luan, T Liu, HJ Lee, L Fang, Y Wang… - Nature, 2020 - nature.com
The zebrafish (Danio rerio) has been widely used in the study of human disease and
development, and about 70% of the protein-coding genes are conserved between the two …

[HTML][HTML] 3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis

X Luo, Y Liu, D Dang, T Hu, Y Hou, X Meng, F Zhang… - Cell, 2021 - cell.com
Elucidating the regulatory mechanisms of human brain evolution is essential to
understanding human cognition and mental disorders. We generated multi-omics profiles …

The 3D architecture of the pepper genome and its relationship to function and evolution

Y Liao, J Wang, Z Zhu, Y Liu, J Chen, Y Zhou… - Nature …, 2022 - nature.com
The organization of chromatin into self-interacting domains is universal among eukaryotic
genomes, though how and why they form varies considerably. Here we report a …

Epigenetic regulatory layers in the 3D nucleus

A Willemin, D Szabó, A Pombo - Molecular Cell, 2024 - cell.com
Nearly 7 decades have elapsed since Francis Crick introduced the central dogma of
molecular biology, as part of his ideas on protein synthesis, setting the fundamental rules of …

3D genome organization contributes to genome instability at fragile sites

D Sarni, T Sasaki, M Irony Tur-Sinai, K Miron… - Nature …, 2020 - nature.com
Common fragile sites (CFSs) are regions susceptible to replication stress and are hotspots
for chromosomal instability in cancer. Several features were suggested to underlie CFS …