Towards a complete map of the human long non-coding RNA transcriptome

B Uszczynska-Ratajczak, J Lagarde… - Nature Reviews …, 2018 - nature.com
Gene maps, or annotations, enable us to navigate the functional landscape of our genome.
They are a resource upon which virtually all studies depend, from single-gene to genome …

Reuse of public genome-wide gene expression data

J Rung, A Brazma - Nature Reviews Genetics, 2013 - nature.com
Our understanding of gene expression has changed dramatically over the past decade,
largely catalysed by technological developments. High-throughput experiments …

The human transcriptome across tissues and individuals

M Melé, PG Ferreira, F Reverter, DS DeLuca… - Science, 2015 - science.org
Transcriptional regulation and posttranscriptional processing underlie many cellular and
organismal phenotypes. We used RNA sequence data generated by Genotype-Tissue …

Transcriptome and genome sequencing uncovers functional variation in humans

T Lappalainen, M Sammeth, MR Friedländer… - Nature, 2013 - nature.com
Genome sequencing projects are discovering millions of genetic variants in humans, and
interpretation of their functional effects is essential for understanding the genetic basis of …

Landscape of transcription in human cells

S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann… - Nature, 2012 - nature.com
Eukaryotic cells make many types of primary and processed RNAs that are found either in
specific subcellular compartments or throughout the cells. A complete catalogue of these …

The evolutionary landscape of alternative splicing in vertebrate species

NL Barbosa-Morais, M Irimia, Q Pan, HY Xiong… - Science, 2012 - science.org
How species with similar repertoires of protein-coding genes differ so markedly at the
phenotypic level is poorly understood. By comparing organ transcriptomes from vertebrate …

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

A Battle, S Mostafavi, X Zhu, JB Potash… - Genome …, 2014 - genome.cshlp.org
Understanding the consequences of regulatory variation in the human genome remains a
major challenge, with important implications for understanding gene regulation and …

[HTML][HTML] Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues

L Florea, L Song, SL Salzberg - F1000Research, 2013 - ncbi.nlm.nih.gov
Alternative splicing is widely recognized for its roles in regulating genes and creating gene
diversity. However, despite many efforts, the repertoire of gene splicing variation is still …

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

T Derrien, R Johnson, G Bussotti, A Tanzer… - Genome …, 2012 - genome.cshlp.org
The human genome contains many thousands of long noncoding RNAs (lncRNAs). While
several studies have demonstrated compelling biological and disease roles for individual …

Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome

D Garrido-Martín, B Borsari, M Calvo, F Reverter… - Nature …, 2021 - nature.com
Alternative splicing (AS) is a fundamental step in eukaryotic mRNA biogenesis. Here, we
develop an efficient and reproducible pipeline for the discovery of genetic variants that affect …