Present and future of culturing bacteria

J Overmann, B Abt, J Sikorski - Annual review of microbiology, 2017 - annualreviews.org
The cultivation of bacteria is highly biased toward a few phylogenetic groups. Many of the
currently underexplored bacterial lineages likely have novel biosynthetic pathways and …

The bacterial sulfur cycle in expanding dysoxic and euxinic marine waters

DM van Vliet, FAB von Meijenfeldt… - Environmental …, 2021 - Wiley Online Library
Dysoxic marine waters (DMW,< 1 μM oxygen) are currently expanding in volume in the
oceans, which has biogeochemical, ecological and societal consequences on a global …

Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

NA Ahlgren, J Ren, YY Lu, JA Fuhrman… - Nucleic acids …, 2017 - academic.oup.com
Viruses and their host genomes often share similar oligonucleotide frequency (ONF)
patterns, which can be used to predict the host of a given virus by finding the host with the …

Deciphering ocean carbon in a changing world

MA Moran, EB Kujawinski, A Stubbins… - Proceedings of the …, 2016 - National Acad Sciences
Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon
on Earth, comparable in size to the atmospheric CO2 reservoir. A vast number of …

[图书][B] Geomicrobiology

HL Ehrlich, DK Newman - 2008 - taylorfrancis.com
Uncovers the Key Role Microbes Play in the Transformation of Oxidizable and Reducible
MineralsMany areas of geomicrobial processes are receiving serious attention from …

Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages

K Kieft, Z Zhou, RE Anderson, A Buchan… - Nature …, 2021 - nature.com
Microbial sulfur metabolism contributes to biogeochemical cycling on global scales. Sulfur
metabolizing microbes are infected by phages that can encode auxiliary metabolic genes …

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

BK Swan, B Tupper, A Sczyrba… - Proceedings of the …, 2013 - National Acad Sciences
Planktonic bacteria dominate surface ocean biomass and influence global biogeochemical
processes, but remain poorly characterized owing to difficulties in cultivation. Using large …

The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

TJ Williams, D Wilkins, E Long, F Evans… - Environmental …, 2013 - Wiley Online Library
Heterotrophic marine bacteria play key roles in remineralizing organic matter generated
from primary production. However, far more is known about which groups are dominant than …

Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean

BP Durham, AK Boysen, LT Carlson… - Nature …, 2019 - nature.com
In the surface ocean, phytoplankton transform inorganic substrates into organic matter that
fuels the activity of heterotrophic microorganisms, creating intricate metabolic networks that …

Sulfur oxidation genes in diverse deep-sea viruses

K Anantharaman, MB Duhaime, JA Breier, KA Wendt… - Science, 2014 - science.org
Viruses are the most abundant biological entities in the oceans and a pervasive cause of
mortality of microorganisms that drive biogeochemical cycles. Although the ecological and …