CRISPR technologies for precise epigenome editing

M Nakamura, Y Gao, AA Dominguez, LS Qi - Nature Cell Biology, 2021 - nature.com
The epigenome involves a complex set of cellular processes governing genomic activity.
Dissecting this complexity necessitates the development of tools capable of specifically …

Long-range enhancer–promoter contacts in gene expression control

S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …

A genome-wide framework for mapping gene regulation via cellular genetic screens

M Gasperini, AJ Hill, JL McFaline-Figueroa, B Martin… - Cell, 2019 - cell.com
Over one million candidate regulatory elements have been identified across the human
genome, but nearly all are unvalidated and their target genes uncertain. Approaches based …

Towards a comprehensive catalogue of validated and target-linked human enhancers

M Gasperini, JM Tome, J Shendure - Nature Reviews Genetics, 2020 - nature.com
The human gene catalogue is essentially complete, but we lack an equivalently vetted
inventory of bona fide human enhancers. Hundreds of thousands of candidate enhancers …

Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening

J Joung, S Konermann, JS Gootenberg… - Nature protocols, 2017 - nature.com
Forward genetic screens are powerful tools for the unbiased discovery and functional
characterization of specific genetic elements associated with a phenotype of interest …

Non-coding driver mutations in human cancer

K Elliott, E Larsson - Nature Reviews Cancer, 2021 - nature.com
Tumour formation involves random mutagenic events and positive evolutionary selection
acting on a subset of such events, referred to as driver mutations. A decade of careful …

Epigenome editing technologies for discovery and medicine

SR McCutcheon, D Rohm, N Iglesias… - Nature …, 2024 - nature.com
Epigenome editing has rapidly evolved in recent years, with diverse applications that
include elucidating gene regulation mechanisms, annotating coding and noncoding …

CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome

TS Klann, JB Black, M Chellappan, A Safi, L Song… - Nature …, 2017 - nature.com
Large genome-mapping consortia and thousands of genome-wide association studies have
identified non-protein-coding elements in the genome as having a central role in various …

CRISPR/Cas9 targeting events cause complex deletions and insertions at 17 sites in the mouse genome

HY Shin, C Wang, HK Lee, KH Yoo, X Zeng… - Nature …, 2017 - nature.com
Although CRISPR/Cas9 genome editing has provided numerous opportunities to interrogate
the functional significance of any given genomic site, there is a paucity of data on the extent …

[HTML][HTML] CRISPR/Cas9-based engineering of the epigenome

J Pulecio, N Verma, E Mejía-Ramírez, D Huangfu… - Cell stem cell, 2017 - cell.com
Determining causal relationships between distinct chromatin features and gene expression,
and ultimately cell behavior, remains a major challenge. Recent developments in targetable …