Control theory meets synthetic biology

D Del Vecchio, AJ Dy, Y Qian - Journal of The Royal …, 2016 - royalsocietypublishing.org
The past several years have witnessed an increased presence of control theoretic concepts
in synthetic biology. This review presents an organized summary of how these control …

Synthetic biology in mammalian cells: next generation research tools and therapeutics

F Lienert, JJ Lohmueller, A Garg… - Nature reviews Molecular …, 2014 - nature.com
Recent progress in DNA manipulation and gene circuit engineering has greatly improved
our ability to programme and probe mammalian cell behaviour. These advances have led to …

Large-scale design of robust genetic circuits with multiple inputs and outputs for mammalian cells

BH Weinberg, NTH Pham, LD Caraballo… - Nature …, 2017 - nature.com
Engineered genetic circuits for mammalian cells often require extensive fine-tuning to
perform as intended. We present a robust, general, scalable system, called'Boolean logic …

Effector biology of plant-associated organisms: concepts and perspectives

J Win, A Chaparro-Garcia, K Belhaj… - Cold Spring Harbor …, 2012 - symposium.cshlp.org
Every plant is closely associated with a variety of living organisms. Therefore, deciphering
how plants interact with mutualistic and parasitic organisms is essential for a comprehensive …

Programmable protein circuit design

Z Chen, MB Elowitz - Cell, 2021 - cell.com
A fundamental challenge in synthetic biology is to create molecular circuits that can program
complex cellular functions. Because proteins can bind, cleave, and chemically modify one …

Toward rational design of high-efficiency enzyme cascades

Y Zhang, H Hess - ACS Catalysis, 2017 - ACS Publications
The vision of assembling molecules in a manner similar to a factory, where parts pass from
workstation to workstation, is highly appealing. A key requirement to achieve such control …

Diels-Alder reaction–triggered bioorthogonal protein decaging in living cells

J Li, S Jia, PR Chen - Nature chemical biology, 2014 - nature.com
Small molecules that specifically activate an intracellular protein of interest are highly
desirable. A generally applicable strategy, however, remains elusive. Herein we describe a …

Palladium-triggered deprotection chemistry for protein activation in living cells

J Li, J Yu, J Zhao, J Wang, S Zheng, S Lin, L Chen… - Nature …, 2014 - nature.com
Employing small molecules or chemical reagents to modulate the function of an intracellular
protein, particularly in a gain-of-function fashion, remains a challenge. In contrast to inhibitor …

Bacteria fighting back: how pathogens target and subvert the host innate immune system

LE Reddick, NM Alto - Molecular cell, 2014 - cell.com
The innate immune system has evolved under selective pressure since the radiation of
multicellular life approximately 600 million years ago. Because of this long history, innate …

Micro total analysis systems: fundamental advances and applications in the laboratory, clinic, and field

ML Kovarik, DM Ornoff, AT Melvin, NC Dobes… - Analytical …, 2013 - ACS Publications
Assay devices designed for these applications offer improvements to existing methods or
provide fundamentally new strategies. Both mature methods and novel techniques have …