DCEO biotechnology: tools to design, construct, evaluate, and optimize the metabolic pathway for biosynthesis of chemicals

X Chen, C Gao, L Guo, G Hu, Q Luo, J Liu… - Chemical …, 2018 - ACS Publications
Chemical synthesis is a well established route for producing many chemicals on a large
scale, but some drawbacks still exist in this process, such as unstable intermediates …

Computational tools for the synthetic design of biochemical pathways

MH Medema, R Van Raaphorst, E Takano… - Nature Reviews …, 2012 - nature.com
As the field of synthetic biology is developing, the prospects for de novo design of
biosynthetic pathways are becoming more and more realistic. Hence, there is an increasing …

Software applications for flux balance analysis

M Lakshmanan, G Koh, BKS Chung… - Briefings in …, 2014 - academic.oup.com
Flux balance analysis (FBA) is a widely used computational method for characterizing and
engineering intrinsic cellular metabolism. The increasing number of its successful …

Construction and completion of flux balance models from pathway databases

M Latendresse, M Krummenacker, M Trupp… - …, 2012 - academic.oup.com
Motivation: Flux balance analysis (FBA) is a well-known technique for genome-scale
modeling of metabolic flux. Typically, an FBA formulation requires the accurate specification …

BioMet Toolbox: genome-wide analysis of metabolism

M Cvijovic, R Olivares-Hernï¿ ½ndez… - Nucleic acids …, 2010 - academic.oup.com
The rapid progress of molecular biology tools for directed genetic modifications, accurate
quantitative experimental approaches, high-throughput measurements, together with …

Computer-aided design for metabolic engineering

A Fernández-Castané, T Fehér, P Carbonell… - Journal of …, 2014 - Elsevier
The development and application of biotechnology-based strategies has had a great socio-
economical impact and is likely to play a crucial role in the foundation of more sustainable …

Synthetic biology of avermectin for production improvement and structure diversification

Y Zhuo, T Zhang, Q Wang, P Cruz‐Morales… - Biotechnology …, 2014 - Wiley Online Library
Natural products are still key sources of current clinical drugs and innovative therapeutic
agents. Since wild‐type microorganisms only produce natural products in very small …

Database and tools for metabolic network analysis

LS Jing, FFM Shah, MS Mohamad, NL Hamran… - Biotechnology and …, 2014 - Springer
Metabolic network analysis has attracted much attention in the area of systems biology. It
has a profound role in understanding the key features of organism metabolic networks and …

Metabolic fluxes in Lactic acid bacteria—A review

J Ferrer Valenzuela, LA Pinuer… - Food …, 2015 - Taylor & Francis
The technological role of lactic acid bacteria (LAB) has consistently increased in the recent
decades. This is due to its large cellular production capabilities of metabolites with …

Resources and tools for the high-throughput, multi-omic study of intestinal microbiota

A Blanco-Míguez, F Fdez-Riverola… - Briefings in …, 2019 - academic.oup.com
The human gut microbiome impacts several aspects of human health and disease, including
digestion, drug metabolism and the propensity to develop various inflammatory …