Motivation Protein-to-genome alignment is critical to annotating genes in non-model
organisms. While there are a few tools for this purpose, all of them were developed over 10 …

Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …

BRAKER is a pipeline for highly accurate and fully automated gene prediction in novel
eukaryotic genomes. It combines two major tools: GeneMark-ES/ET and AUGUSTUS …

Motivation Recent advances in sequencing technologies promise ultra-long reads of∼ 100
kb in average, full-length mRNA or cDNA reads in high throughput and genomic contigs …

The kākāpō is a flightless parrot endemic to New Zealand. Once common in the archipelago,
only 201 individuals remain today, most of them descending from an isolated island …

Insects are the largest group of animals on the planet and have a huge impact on human life
by providing resources, transmitting diseases, and damaging agricultural crop production …

Pacific Ocean rockfishes (genus Sebastes) exhibit extreme variation in life span, with some
species being among the most long-lived extant vertebrates. We de novo assembled the …

Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …

The Cucurbita genus contains several economically important species in the Cucurbitaceae
family. Here, we report high-quality genome sequences of C. maxima and C. moschata and …

Here we present the 15 pseudochromosomes of sweet potato, Ipomoea batatas, the seventh
most important crop in the world and the fourth most significant in China. By using a novel …