[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …
molecules have led to substantial improvements in accuracy, read length and throughput …
Opportunities and challenges in long-read sequencing data analysis
Long-read technologies are overcoming early limitations in accuracy and throughput,
broadening their application domains in genomics. Dedicated analysis tools that take into …
broadening their application domains in genomics. Dedicated analysis tools that take into …
[HTML][HTML] Nanopore sequencing and assembly of a human genome with ultra-long reads
We report the sequencing and assembly of a reference genome for the human GM12878
Utah/Ceph cell line using the MinION (Oxford Nanopore Technologies) nanopore …
Utah/Ceph cell line using the MinION (Oxford Nanopore Technologies) nanopore …
Nanopore sequencing: Review of potential applications in functional genomics
Molecular biology has been led by various measurement technologies, and increased
throughput has developed omics analysis. The development of massively parallel …
throughput has developed omics analysis. The development of massively parallel …
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
Abstract The handheld Oxford Nanopore MinION sequencer generates ultra-long reads with
minimal cost and time requirements, which makes sequencing genomes at the bench …
minimal cost and time requirements, which makes sequencing genomes at the bench …
A world of opportunities with nanopore sequencing
RM Leggett, MD Clark - Journal of experimental botany, 2017 - academic.oup.com
Abstract Oxford Nanopore Technologies' MinION sequencer was launched in pre-release
form in 2014 and represents an exciting new sequencing paradigm. The device offers multi …
form in 2014 and represents an exciting new sequencing paradigm. The device offers multi …
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
Multiplexing, the simultaneous sequencing of multiple barcoded DNA samples on a single
flow cell, has made Oxford Nanopore sequencing cost-effective for small genomes …
flow cell, has made Oxford Nanopore sequencing cost-effective for small genomes …
MinIONQC: fast and simple quality control for MinION sequencing data
MinIONQC provides rapid diagnostic plots and quality control data from one or more
flowcells of sequencing data from Oxford Nanopore Technologies' MinION instrument. It can …
flowcells of sequencing data from Oxford Nanopore Technologies' MinION instrument. It can …
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
V Sevim, J Lee, R Egan, A Clum, H Hundley, J Lee… - Scientific data, 2019 - nature.com
Metagenomic sequence data from defined mock communities is crucial for the assessment
of sequencing platform performance and downstream analyses, including assembly, binning …
of sequencing platform performance and downstream analyses, including assembly, binning …
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Ancient DNA research has been revolutionized following development of next-generation
sequencing platforms. Although a number of such platforms have been applied to ancient …
sequencing platforms. Although a number of such platforms have been applied to ancient …