Protein–protein interactions in virus–host systems

AF Brito, JW Pinney - Frontiers in microbiology, 2017 - frontiersin.org
To study virus–host protein interactions, knowledge about viral and host protein
architectures and repertoires, their particular evolutionary mechanisms, and information on …

Computational approaches for prediction of pathogen-host protein-protein interactions

E Nourani, F Khunjush, S Durmuş - Frontiers in microbiology, 2015 - frontiersin.org
Infectious diseases are still among the major and prevalent health problems, mostly
because of the drug resistance of novel variants of pathogens. Molecular interactions …

[HTML][HTML] How different viruses perturb host cellular machinery via short linear motifs

S Idrees, KR Paudel, T Sadaf, PM Hansbro - EXCLI journal, 2023 - ncbi.nlm.nih.gov
The virus interacts with its hosts by developing protein-protein interactions. Most viruses
employ protein interactions to imitate the host protein: A viral protein with the same amino …

Virus-host interactomics: new insights and opportunities for antiviral drug discovery

B De Chassey, L Meyniel-Schicklin, J Vonderscher… - Genome medicine, 2014 - Springer
The current therapeutic arsenal against viral infections remains limited, with often poor
efficacy and incomplete coverage, and appears inadequate to face the emergence of drug …

Bioinformatics prediction and screening of viral mimicry candidates through integrating known and predicted DMI data

S Idrees, KR Paudel - Archives of Microbiology, 2024 - Springer
Abstract Domain–motif interactions (DMIs) represent transient bonds formed when a Short
Linear Motif (SLiM) engages a globular domain via a compact contact interface …

Machine learning and its applications for protozoal pathogens and protozoal infectious diseases

RS Hu, AEL Hesham, Q Zou - Frontiers in Cellular and Infection …, 2022 - frontiersin.org
In recent years, massive attention has been attracted to the development and application of
machine learning (ML) in the field of infectious diseases, not only serving as a catalyst for …

An overview of recent advances in structural bioinformatics of protein–protein interactions and a guide to their principles

G Sudha, R Nussinov, N Srinivasan - Progress in biophysics and molecular …, 2014 - Elsevier
Rich data bearing on the structural and evolutionary principles of protein–protein
interactions are paving the way to a better understanding of the regulation of function in the …

Genetic profiling and comorbidities of zika infection

MA Moni, P Lio' - The Journal of infectious diseases, 2017 - academic.oup.com
Background The difficulty in distinguishing infection by Zika virus (ZIKV) from other
flaviviruses is a global health concern, particularly given the high risk of neurologic …

HMI-PRED: a web server for structural prediction of host-microbe interactions based on interface mimicry

E Guven-Maiorov, A Hakouz, S Valjevac… - Journal of molecular …, 2020 - Elsevier
Microbes, commensals, and pathogens, control the numerous functions in the host cells.
They can alter host signaling and modulate immune surveillance by interacting with the host …

Prediction of GCRV virus-host protein interactome based on structural motif-domain interactions

A Zhang, L He, Y Wang - BMC bioinformatics, 2017 - Springer
Background Grass carp hemorrhagic disease, caused by grass carp reovirus (GCRV), is the
most fatal causative agent in grass carp aquaculture. Protein-protein interactions between …