Mobility of plasmids

C Smillie, MP Garcillán-Barcia… - Microbiology and …, 2010 - Am Soc Microbiol
Plasmids are key vectors of horizontal gene transfer and essential genetic engineering tools.
They code for genes involved in many aspects of microbial biology, including detoxication …

Biodiversity of vibrios

FL Thompson, T Iida, J Swings - Microbiology and molecular …, 2004 - Am Soc Microbiol
Vibrios are ubiquitous and abundant in the aquatic environment. A high abundance of
vibrios is also detected in tissues and/or organs of various marine algae and animals, eg …

Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae …

M Adeolu, S Alnajar, S Naushad… - … journal of systematic …, 2016 - microbiologyresearch.org
Understanding of the phylogeny and interrelationships of the genera within the order
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

J Blom, J Kreis, S Spänig, T Juhre… - Nucleic acids …, 2016 - academic.oup.com
The rapidly increasing availability of microbial genome sequences has led to a growing
demand for bioinformatics software tools that support the functional analysis based on the …

Biology of bacteriocyte-associated endosymbionts of plant sap-sucking insects

P Baumann - Annu. Rev. Microbiol., 2005 - annualreviews.org
Psyllids, whiteflies, aphids, and mealybugs are members of the suborder Sternorrhyncha
and share a common property, namely the utilization of plant sap as their food source. Each …

Bacterial genome instability

E Darmon, DRF Leach - Microbiology and Molecular Biology …, 2014 - Am Soc Microbiol
Bacterial genomes are remarkably stable from one generation to the next but are plastic on
an evolutionary time scale, substantially shaped by horizontal gene transfer, genome …

Phylogenomics and the reconstruction of the tree of life

F Delsuc, H Brinkmann, H Philippe - Nature Reviews Genetics, 2005 - nature.com
As more complete genomes are sequenced, phylogenetic analysis is entering a new era—
that of phylogenomics. One branch of this expanding field aims to reconstruct the …

Horizontal gene transfer, genome innovation and evolution

JP Gogarten, JP Townsend - Nature Reviews Microbiology, 2005 - nature.com
To what extent is the tree of life the best representation of the evolutionary history of
microorganisms? Recent work has shown that, among sets of prokaryotic genomes in which …

Inferring horizontal gene transfer

M Ravenhall, N Škunca, F Lassalle… - PLoS computational …, 2015 - journals.plos.org
Horizontal or Lateral Gene Transfer (HGT or LGT) is the transmission of portions of genomic
DNA between organisms through a process decoupled from vertical inheritance. In the …

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

EV Koonin, YI Wolf - Nucleic acids research, 2008 - academic.oup.com
The first bacterial genome was sequenced in 1995, and the first archaeal genome in 1996.
Soon after these breakthroughs, an exponential rate of genome sequencing was …