Unraveling the detailed mechanism of excited-state proton transfer

P Zhou, K Han - Accounts of chemical research, 2018 - ACS Publications
Conspectus As one of the most fundamental processes, excited-state proton transfer (ESPT)
plays a major role in both chemical and biological systems. In the past several decades …

The role of proton transfer on mutations

R Srivastava - Frontiers in Chemistry, 2019 - frontiersin.org
Hydrogen bonds play a critical role in nucleobase studies as they encode genes, map
protein structures, provide stability to the base pairs, and are involved in spontaneous and …

Influence of coupling and embedding schemes on QM size convergence in QM/MM approaches for the example of a proton transfer in DNA

S Roßbach, C Ochsenfeld - Journal of chemical theory and …, 2017 - ACS Publications
The influence of embedding and coupling schemes on the convergence of the QM size in
the QM/MM approach is investigated for the transfer of a proton in a DNA base pair. We find …

The significant role of the intermolecular CH⋯ O/N hydrogen bonds in governing the biologically important pairs of the DNA and RNA modified bases: a …

OO Brovarets', YP Yurenko… - Journal of Biomolecular …, 2015 - Taylor & Francis
This paper is a logical continuation of the theoretical survey of the CH⋯ O/N specific contacts
in the nucleobase pairs using a wide arsenal of the modern methods, which was initiated in …

Proton transfer during DNA strand separation as a source of mutagenic guanine-cytosine tautomers

L Slocombe, M Winokan, J Al-Khalili… - Communications …, 2022 - nature.com
Proton transfer between the DNA bases can lead to mutagenic Guanine-Cytosine tautomers.
Over the past several decades, a heated debate has emerged over the biological impact of …

Peripheral nucleic bases boost H 2 production by synthetic molecular catalysts in acidic water

S Das, C Das, NA Shah, S Ghorai… - Chemical …, 2023 - pubs.rsc.org
The strategic inclusion of nucleic bases adenine, cytosine, and thymine, in the form of outer
coordination sphere, positively impacts the electro-and photocatalytic H2 production by …

Understanding DNA under oxidative stress and sensitization: The role of molecular modeling

E Dumont, A Monari - Frontiers in chemistry, 2015 - frontiersin.org
DNA is constantly exposed to damaging threats coming from oxidative stress, ie, from the
presence of free radicals and reactive oxygen species. Sensitization from exogenous and …

The influence of base pair tautomerism on single point mutations in aqueous DNA

A Gheorghiu, PV Coveney, AA Arabi - Interface focus, 2020 - royalsocietypublishing.org
The relationship between base pair hydrogen bond proton transfer and the rate of
spontaneous single point mutations at ambient temperatures and pressures in aqueous …

Environment assisted quantum model for studying RNA-DNA-error correlation created due to the base tautomery

F Ghasemi, A Tirandaz - Scientific Reports, 2023 - nature.com
The adaptive mutation phenomenon has been drawing the attention of biologists for several
decades in evolutionist community. In this study, we propose a quantum mechanical model …

Double proton transfer in the dimer of formic acid: An efficient quantum mechanical scheme

H Liu, J Cao, W Bian - Frontiers in Chemistry, 2019 - frontiersin.org
Double proton transfer plays an important role in biology and chemistry, such as with DNA
base pairs, proteins and molecular clusters, and direct information about these processes …