A brief history of bioinformatics
J Gauthier, AT Vincent, SJ Charette… - Briefings in …, 2019 - academic.oup.com
It is easy for today's students and researchers to believe that modern bioinformatics
emerged recently to assist next-generation sequencing data analysis. However, the very …
emerged recently to assist next-generation sequencing data analysis. However, the very …
The use of next generation sequencing for improving food safety: Translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
Insights into land plant evolution garnered from the Marchantia polymorpha genome
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …
an ancestral charophycean alga from which they inherited developmental, biochemical, and …
A chromosome conformation capture ordered sequence of the barley genome
Cereal grasses of the Triticeae tribe have been the major food source in temperate regions
since the dawn of agriculture. Their large genomes are characterized by a high content of …
since the dawn of agriculture. Their large genomes are characterized by a high content of …
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
N Dierckxsens, P Mardulyn, G Smits - Nucleic acids research, 2017 - academic.oup.com
The evolution in next-generation sequencing (NGS) technology has led to the development
of many different assembly algorithms, but few of them focus on assembling the organelle …
of many different assembly algorithms, but few of them focus on assembling the organelle …
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury… - Nature …, 2016 - nature.com
Listeria monocytogenes (Lm) is a major human foodborne pathogen. Numerous Lm
outbreaks have been reported worldwide and associated with a high case fatality rate …
outbreaks have been reported worldwide and associated with a high case fatality rate …
Healthy human gut phageome
The role of bacteriophages in influencing the structure and function of the healthy human gut
microbiome is unknown. With few exceptions, previous studies have found a high level of …
microbiome is unknown. With few exceptions, previous studies have found a high level of …
Lytic to temperate switching of viral communities
Microbial viruses can control host abundances via density-dependent lytic predator–prey
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …
hybridSPAdes: an algorithm for hybrid assembly of short and long reads
Motivation: Recent advances in single molecule real-time (SMRT) and nanopore
sequencing technologies have enabled high-quality assemblies from long and inaccurate …
sequencing technologies have enabled high-quality assemblies from long and inaccurate …
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
We present an in silico approach for the reconstruction of complete mitochondrial genomes
of non-model organisms directly from next-generation sequencing (NGS) data …
of non-model organisms directly from next-generation sequencing (NGS) data …