In general perturbation methods starts with a known exact solution of a problem and add
“small” variation terms in order to approach to a solution for a related problem without known …

In this communication we carry out an in-depth review of a very versatile QSPR-like method.
The method name is MARCH-INSIDE (MARkov CHains Ivariants for Network Selection and …

RNA function annotation is often based on alignment to a previously studied template. In
contrast to the study of proteins, there are not many alignment-free methods to predict RNA …

A model for the information transfer from DNA to protein using quantum information and
computation techniques is presented. DNA is modeled as the sender and proteins are …

In the present study, three different physicochemical molecular properties for peptides were
calculated using the program MARCH-INSIDE: atomic polarizability, partition coefficient, and …

Descriptors calculated from a specific representation scheme encode only one part of the
chemical information. For this reason, there is a need to construct novel graphical …

RNA representation is one of the most important issues in bioinformatics. A challenge,
however, is achieving a correct representation that is able to encode the directionality …

tRNA is an important small molecule that was preserved throughout evolution. It plays a
central role in the molecular translation process. All tRNAs have a characteristic structure …

Theoretical calculations on the 64 nucleotide triplets were carried out to analyze the
possible differences in partial atomic charges of the central nucleotides influenced by …

Present chapter reviews the application of Quantitative Structure-Activity Relationships for
the treatment of molecules involving thousands of atoms, such as proteins, nucleic acids …