Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Proteomics by mass spectrometry: approaches, advances, and applications

JR Yates, CI Ruse… - Annual review of …, 2009 - annualreviews.org
Mass spectrometry (MS) is the most comprehensive and versatile tool in large-scale
proteomics. In this review, we dissect the overall framework of the MS experiment into its key …

Toward a comprehensive characterization of a human cancer cell phosphoproteome

H Zhou, S Di Palma, C Preisinger, M Peng… - Journal of proteome …, 2013 - ACS Publications
Mass spectrometry (MS)-based phosphoproteomics has achieved extraordinary success in
qualitative and quantitative analysis of cellular protein phosphorylation. Considering that an …

Strong anion exchange‐mediated phosphoproteomics reveals extensive human non‐canonical phosphorylation

G Hardman, S Perkins, PJ Brownridge, CJ Clarke… - The EMBO …, 2019 - embopress.org
Phosphorylation is a key regulator of protein function under (patho) physiological conditions,
and defining site‐specific phosphorylation is essential to understand basic and disease …

An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome

Y Bian, C Song, K Cheng, M Dong, F Wang… - Journal of …, 2014 - Elsevier
Protein phosphorylation is one of the most common post-translational modifications. It plays
key roles in regulating diverse biological processes of liver tissues. To better understand the …

Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry

R Chen, X Jiang, D Sun, G Han, F Wang… - Journal of proteome …, 2009 - ACS Publications
The study of protein glycosylation has lagged far behind the progress of current proteomics
because of the enormous complexity, wide dynamic range distribution and low …

Analytical strategies for phosphoproteomics

TE Thingholm, ON Jensen, MR Larsen - Proteomics, 2009 - Wiley Online Library
Protein phosphorylation is a key regulator of cellular signaling pathways. It is involved in
most cellular events in which the complex interplay between protein kinases and protein …

[HTML][HTML] Enrichment techniques employed in phosphoproteomics

J Fíla, D Honys - Amino acids, 2012 - Springer
Rapid changes of protein phosphorylation play a crucial role in the regulation of many
cellular processes. Being post-translationally modified, phosphoproteins are often present in …

Widening the bottleneck of phosphoproteomics: evolving strategies for phosphopeptide enrichment

TY Low, MA Mohtar, PY Lee, N Omar… - Mass spectrometry …, 2021 - Wiley Online Library
Phosphorylation is a form of protein posttranslational modification (PTM) that regulates many
biological processes. Whereas phosphoproteomics is a scientific discipline that identifies …

Bifunctional magnetic supramolecular-organic framework: a nanoprobe for simultaneous enrichment of glycosylated and phosphorylated peptides

H Zheng, J Jia, Z Li, Q Jia - Analytical chemistry, 2020 - ACS Publications
Protein glycosylation and phosphorylation are two important protein post-translational
modifications. Mass spectrometry (MS) has been proved to be a powerful technique in …