Transposable elements domesticated and neofunctionalized by eukaryotic genomes

AM Alzohairy, G Gyulai, RK Jansen, A Bahieldin - Plasmid, 2013 - Elsevier
Whole genome sequencing has provided a massive amount of information about the origin,
diversity and genomic impact of repetitive DNA sequences (repDNA). Among the many …

Environmental stress activation of plant long-terminal repeat retrotransposons

AM Alzohairy, JSM Sabir, G Gyulai… - Functional Plant …, 2014 - CSIRO Publishing
Genomic retrotransposons (RTs) are major components of most plant genomes. They
spread throughout the genomes by a process termed retrotransposition, which consists of …

Distinctive patterns of age-dependent hypomethylation in interspersed repetitive sequences

P Jintaridth, A Mutirangura - Physiological genomics, 2010 - journals.physiology.org
Interspersed repetitive sequences (IRSs) are a major contributor to genome size and may
contribute to cellular functions. IRSs are subdivided according to size and functionally …

Artificial chromosome formation in maize (Zea mays L.)

EV Ananiev, C Wu, MA Chamberlin, S Svitashev… - Chromosoma, 2009 - Springer
We report on the construction of maize minichromosomes using shuttle vectors harboring
native centromeric segments, origins of replication, selectable marker genes, and telomeric …

Mobilization of retrotransposons as a cause of chromosomal diversification and rapid speciation: the case for the Antarctic teleost genus Trematomus

J Auvinet, P Graça, L Belkadi, L Petit, E Bonnivard… - BMC genomics, 2018 - Springer
Background The importance of transposable elements (TEs) in the genomic remodeling and
chromosomal rearrangements that accompany lineage diversification in vertebrates remains …

Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats

MH Saied, J Marzec, S Khalid, P Smith, TA Down… - PloS one, 2012 - journals.plos.org
Methylated DNA immunoprecipitation followed by high-throughput sequencing (MeDIP-seq)
has the potential to identify changes in DNA methylation important in cancer development. In …

Correlated evolution of LTR retrotransposons and genome size in the genus eleocharis

F Zedek, J Šmerda, P Šmarda, P Bureš - BMC Plant Biology, 2010 - Springer
Abstract Background Transposable elements (TEs) are considered to be an important
source of genome size variation and genetic and phenotypic plasticity in eukaryotes. Most of …

Genetic diversity of flax genotypes (Linum usitatissimum L.) by using agro-morphological properties and molecular markers

MZ Kocak, MG Kaysim, A Aydın, C Erdinc… - Genetic Resources and …, 2023 - Springer
Flax is one of the significant crops owing to oilseed and fibre attributes, exhibiting a wide
distribution in many parts of the world. In this regard, we collected 29 genotypes of the flax …

Mobilization of Stowaway-like MITEs in newly formed allohexaploid wheat species

B Yaakov, K Kashkush - Plant molecular biology, 2012 - Springer
Transposable elements (TEs) dominate the genetic capacity of most eukaryotes, especially
plants, where they can account for up to 90% of the genome, such as in wheat. The …

Genome‐wide analysis of short interspersed nuclear elements SINES revealed high sequence conservation, gene association and retrotranspositional activity in …

S Ben‐David, B Yaakov, K Kashkush - The Plant Journal, 2013 - Wiley Online Library
Short interspersed nuclear elements (SINE s) are non‐autonomous non‐LTR retroelements
that are present in most eukaryotic species. While SINE s have been intensively investigated …