Transposable elements in plants: Recent advancements, tools and prospects

M Ramakrishnan, L Satish, A Sharma… - Plant Molecular Biology …, 2022 - Springer
Transposable elements (TEs) have long been considered junk DNA; however, the
availability of genome sequences and the growth of omics databases have accelerated the …

Non-coding RNAs in tuberculosis epidemiology: Platforms and approaches for investigating the genome's dark matter

A Almatroudi - International Journal of Molecular Sciences, 2022 - mdpi.com
A growing amount of information about the different types, functions, and roles played by
non-coding RNAs (ncRNAs) is becoming available, as more and more research is done …

Comparative chloroplast genome analysis of Citrus (Rutaceae) species: Insights into genomic characterization, phylogenetic relationships, and discrimination of …

W Shi, W Song, J Liu, C Shi, S Wang - Scientia Horticulturae, 2023 - Elsevier
Citrus species are fruit trees with great economic value worldwide and have been
domesticated and cultivated for several years. Although numerous phylogenetic taxonomy …

Pangenome-wide analysis of cyclic nucleotide-gated channel (CNGC) gene family in citrus Spp. Revealed their intraspecies diversity and potential roles in abiotic …

K Zia, MJ Rao, M Sadaqat, F Azeem, K Fatima… - Frontiers in …, 2022 - frontiersin.org
Cyclic nucleotide-gated channels (CNGC) gene family has been found to be involved in
physiological processes including signaling pathways, environmental stresses, plant growth …

Lineage-specific amplification and epigenetic regulation of LTR-retrotransposons contribute to the structure, evolution, and function of Fabaceae species

LL Yang, XY Zhang, LY Wang, YG Li, XT Li, Y Yang… - BMC genomics, 2023 - Springer
Background Long terminal repeat (LTR)-retrotransposons (LTR-RTs) are ubiquitous and
make up the majority of nearly all sequenced plant genomes, whereas their pivotal roles in …

Genome-wide characterization of long terminal repeat retrotransposons provides insights into trait evolution of four cucurbit species

HN Liu, MS Pei, C Ampomah-Dwamena, GQ He… - Functional & Integrative …, 2023 - Springer
Cucurbits are a diverse plant family that includes economically important crops, such as
cucumber, watermelon, melon, and pumpkin. Knowledge of the roles that long terminal …

Pan‐genome: A promising resource for noncoding RNA discovery in plants

M Tahir ul Qamar, X Zhu, MS Khan, F Xing… - The Plant …, 2020 - Wiley Online Library
Plant genomes contain both protein‐coding and noncoding sequences including
transposable elements (TEs) and noncoding RNAs (ncRNAs). The ncRNAs are recognized …

Complete chloroplast genomes of four Atalantia (Rutaceae) species: insights into comparative analysis, phylogenetic relationships, and divergence time estimation

W Shi, W Song, Y Zhao, C Shi, S Wang - Plant Systematics and Evolution, 2023 - Springer
Atalantia plants are small trees in the family Rutaceae that have great potential for use in
agriculture, medicine, and carving. However, the phylogenetic relationships of Atalantia …

Miniature inverted-repeat transposable elements (MITEs), derived insertional polymorphism as a tool of marker systems for molecular plant breeding

Venkatesh, B Nandini - Molecular Biology Reports, 2020 - Springer
Plant molecular breeding is expected to give significant gains in cultivar development
through development and utilization of suitable molecular marker systems for genetic …

Becoming a selfish clan: recombination associated to reverse-transcription in LTR retrotransposons

HG Drost, DH Sanchez - Genome Biology and Evolution, 2019 - academic.oup.com
Transposable elements (TEs) are parasitic DNA bits capable of mobilization and
mutagenesis, typically suppressed by host's epigenetic silencing. Since the selfish DNA …