RNA-Seq technology and its application in fish transcriptomics

X Qian, Y Ba, Q Zhuang, G Zhong - Omics: a journal of integrative …, 2014 - liebertpub.com
High-throughput sequencing technologies, also known as next-generation sequencing
(NGS) technologies, have revolutionized the way that genomic research is advancing. In …

Zebrafish sex: a complicated affair

WC Liew, L Orbán - Briefings in functional genomics, 2014 - academic.oup.com
In this review, we provide a detailed overview of studies on the elusive sex determination
(SD) and gonad differentiation mechanisms of zebrafish (Danio rerio). We show that the data …

Behavioral and neurogenomic transcriptome changes in wild-derived zebrafish with fluoxetine treatment

RY Wong, SE Oxendine, J Godwin - BMC genomics, 2013 - Springer
Background Stress and anxiety-related behaviors are seen in many organisms. Studies
have shown that in humans and other animals, treatment with selective serotonin reuptake …

The mammalian “obesogen” tributyltin targets hepatic triglyceride accumulation and the transcriptional regulation of lipid metabolism in the liver and brain of zebrafish

A Lyssimachou, JG Santos, A André, J Soares, D Lima… - PloS one, 2015 - journals.plos.org
Recent findings indicate that different Endocrine Disrupting Chemicals (EDCs) interfere with
lipid metabolic pathways in mammals and promote fat accumulation, a previously unknown …

Cytochrome P450-dependent biotransformation capacities in embryonic, juvenile and adult stages of zebrafish (Danio rerio)—a state-of-the-art review

AK Loerracher, T Braunbeck - Archives of Toxicology, 2021 - Springer
Given the strong trend to implement zebrafish (Danio rerio) embryos as translational model
not only in ecotoxicological, but also toxicological testing strategies, there is an increasing …

Gene expression dynamics during rapid organismal diversification in African cichlid fishes

A El Taher, A Böhne, N Boileau, F Ronco… - Nature Ecology & …, 2021 - nature.com
Abstract Changes in gene expression play a fundamental role in phenotypic evolution.
Transcriptome evolutionary dynamics have so far mainly been compared among distantly …

[HTML][HTML] Comprehensive and quantitative proteomic analyses of zebrafish plasma reveals conserved protein profiles between genders and between zebrafish and …

C Li, XF Tan, TK Lim, Q Lin, Z Gong - Scientific reports, 2016 - nature.com
Omic approaches have been increasingly used in the zebrafish model for holistic
understanding of molecular events and mechanisms of tissue functions. However, plasma is …

Influence of endogenous and exogenous estrogenic endocrine on intestinal microbiota in zebrafish

Y Liu, Y Yao, H Li, F Qiao, J Wu, Z Du, M Zhang - PloS one, 2016 - journals.plos.org
Gender is one of the factors influencing the intestinal microbial composition in mammals, but
whether fish also have gender-specific intestinal microbial patterns remains unknown. In this …

Proteomic analysis unveils Gb3-independent alterations and mitochondrial dysfunction in a gla−/− zebrafish model of Fabry disease

HOA Elsaid, M Rivedal, E Skandalou… - Journal of Translational …, 2023 - Springer
Background Fabry disease (FD) is a rare lysosomal storage disorder caused by mutations in
the GLA gene, resulting in reduced or lack of α-galactosidase A activity. This results in the …

The lungfish transcriptome: a glimpse into molecular evolution events at the transition from water to land

MA Biscotti, M Gerdol, A Canapa, M Forconi, E Olmo… - Scientific reports, 2016 - nature.com
Lungfish and coelacanths are the only living sarcopterygian fish. The phylogenetic
relationship of lungfish to the last common ancestor of tetrapods and their close …